Hb_002522_020

Information

Type -
Description -
Location Contig2522: 28516-40846
Sequence    

Annotation

kegg
ID bvg:104901267
description uncharacterized LOC104901267
nr
ID KJB71938.1
description hypothetical protein B456_011G148700, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2T8E0
description Gossypium raimondii chromosome 11, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_011G148700 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein B456_011G148700, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002522_020 0.0 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
2 Hb_088538_020 0.244916394 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
3 Hb_001114_340 0.247892847 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
4 Hb_010417_010 0.2497923685 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000141_240 0.2564701488 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
6 Hb_002073_120 0.2568088499 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
7 Hb_000172_570 0.2663991619 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
8 Hb_023732_040 0.2715150654 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000995_070 0.2724487359 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
10 Hb_001477_140 0.2759122337 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_007017_020 0.2761963683 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
12 Hb_100873_030 0.2788320303 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
13 Hb_000964_060 0.2881718239 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
14 Hb_000009_070 0.2906757404 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
15 Hb_004208_100 0.2960608825 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
16 Hb_064885_080 0.2963948493 - - -
17 Hb_154340_010 0.3000123756 - - truncated nitrate transporter [Fragaria vesca]
18 Hb_000784_040 0.3053367256 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
19 Hb_029866_030 0.3077768093 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
20 Hb_061637_010 0.3085389492 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]

Gene co-expression network

sample Hb_002522_020 Hb_002522_020 Hb_088538_020 Hb_088538_020 Hb_002522_020--Hb_088538_020 Hb_001114_340 Hb_001114_340 Hb_002522_020--Hb_001114_340 Hb_010417_010 Hb_010417_010 Hb_002522_020--Hb_010417_010 Hb_000141_240 Hb_000141_240 Hb_002522_020--Hb_000141_240 Hb_002073_120 Hb_002073_120 Hb_002522_020--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_002522_020--Hb_000172_570 Hb_100873_030 Hb_100873_030 Hb_088538_020--Hb_100873_030 Hb_088538_020--Hb_000141_240 Hb_154340_010 Hb_154340_010 Hb_088538_020--Hb_154340_010 Hb_088538_020--Hb_001114_340 Hb_042223_010 Hb_042223_010 Hb_088538_020--Hb_042223_010 Hb_064885_080 Hb_064885_080 Hb_001114_340--Hb_064885_080 Hb_000995_070 Hb_000995_070 Hb_001114_340--Hb_000995_070 Hb_010174_070 Hb_010174_070 Hb_001114_340--Hb_010174_070 Hb_001114_340--Hb_100873_030 Hb_001114_340--Hb_042223_010 Hb_000784_040 Hb_000784_040 Hb_001114_340--Hb_000784_040 Hb_000009_070 Hb_000009_070 Hb_010417_010--Hb_000009_070 Hb_010417_010--Hb_002073_120 Hb_010417_010--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_010417_010--Hb_004208_100 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170 Hb_000141_240--Hb_100873_030 Hb_018954_010 Hb_018954_010 Hb_000141_240--Hb_018954_010 Hb_000141_240--Hb_000172_570 Hb_000141_240--Hb_002073_120 Hb_000141_240--Hb_000009_070 Hb_000141_240--Hb_000995_070 Hb_002073_120--Hb_000172_570 Hb_002073_120--Hb_000995_070 Hb_002073_120--Hb_004208_100 Hb_002073_120--Hb_000009_070 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000172_570--Hb_000995_070 Hb_000172_570--Hb_000784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0132992 0 0.0357228 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406922 0.032009 0.357227 0.0384692 0

CAGE analysis