Hb_002073_120

Information

Type -
Description -
Location Contig2073: 77256-78427
Sequence    

Annotation

kegg
ID tcc:TCM_041733
description Adenine nucleotide alpha hydrolases-like superfamily protein
nr
ID XP_007016274.1
description Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID A0A061GWU4
description Adenine nucleotide alpha hydrolases-like superfamily protein OS=Theobroma cacao GN=TCM_041733 PE=4 SV=1
Gene Ontology
ID GO:0005886
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_120 0.0 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
2 Hb_000172_570 0.1722270825 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
3 Hb_010417_010 0.1917621719 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000995_070 0.1923213379 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_004208_100 0.1943669694 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
6 Hb_000009_070 0.2125597381 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
7 Hb_000141_240 0.2128764519 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
8 Hb_100873_030 0.2313514854 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
9 Hb_001035_070 0.2383771938 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
10 Hb_023732_040 0.242475655 - - cytochrome P450, putative [Ricinus communis]
11 Hb_004429_070 0.242999208 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000964_060 0.2454819469 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
13 Hb_000161_150 0.2471475751 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
14 Hb_018954_010 0.2489813619 - - -
15 Hb_000141_030 0.2551564862 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
16 Hb_000972_010 0.2561238111 - - PREDICTED: kinesin KP1 [Jatropha curcas]
17 Hb_002522_020 0.2568088499 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
18 Hb_001114_340 0.2572501963 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
19 Hb_005060_020 0.261084106 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
20 Hb_000477_080 0.2617694805 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_002073_120 Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_002073_120--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_002073_120--Hb_010417_010 Hb_000995_070 Hb_000995_070 Hb_002073_120--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_002073_120--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_002073_120--Hb_000009_070 Hb_000141_240 Hb_000141_240 Hb_002073_120--Hb_000141_240 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_010417_010--Hb_000009_070 Hb_010417_010--Hb_000995_070 Hb_010417_010--Hb_004208_100 Hb_100873_030 Hb_100873_030 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000995_070--Hb_000784_040 Hb_004208_100--Hb_000172_570 Hb_004208_100--Hb_000995_070 Hb_011316_120 Hb_011316_120 Hb_004208_100--Hb_011316_120 Hb_003754_080 Hb_003754_080 Hb_004208_100--Hb_003754_080 Hb_000009_070--Hb_100873_030 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_000009_070--Hb_000141_240 Hb_000141_240--Hb_100873_030 Hb_018954_010 Hb_018954_010 Hb_000141_240--Hb_018954_010 Hb_000141_240--Hb_000172_570 Hb_000141_240--Hb_000995_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109148 0.311375 0.0422416 0.750531 0.522628 0.980463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88107 2.41601 17.6571 2.17133 0.199015

CAGE analysis