Hb_000083_040

Information

Type -
Description -
Location Contig83: 116117-124125
Sequence    

Annotation

kegg
ID rcu:RCOM_0885060
description hypothetical protein
nr
ID XP_002522627.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9F8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885060 PE=4 SV=1
Gene Ontology
ID GO:0000166
description phosphoprotein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59767: 123784-124090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006355_050 0.1596491861 - - -
3 Hb_074238_010 0.1758649609 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
4 Hb_007177_010 0.1837774127 - - -
5 Hb_005020_010 0.1838730694 - - -
6 Hb_154340_010 0.1883999708 - - truncated nitrate transporter [Fragaria vesca]
7 Hb_000705_280 0.1976440669 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
8 Hb_000009_070 0.2003172317 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
9 Hb_000638_040 0.2053920296 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
10 Hb_005142_010 0.2082722159 - - -
11 Hb_005841_030 0.2093641216 - - -
12 Hb_000572_050 0.2116674718 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
13 Hb_060455_010 0.2131528103 - - 50 kDa protein [Hevea brasiliensis]
14 Hb_008839_030 0.2145003074 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001403_030 0.2239960011 - - -
16 Hb_000971_060 0.226055475 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000201_020 0.2269607665 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
18 Hb_001545_250 0.227137134 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
19 Hb_010760_010 0.2311970864 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_000141_240 0.2322836218 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_040 Hb_000083_040 Hb_006355_050 Hb_006355_050 Hb_000083_040--Hb_006355_050 Hb_074238_010 Hb_074238_010 Hb_000083_040--Hb_074238_010 Hb_007177_010 Hb_007177_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_154340_010 Hb_154340_010 Hb_000083_040--Hb_154340_010 Hb_000705_280 Hb_000705_280 Hb_000083_040--Hb_000705_280 Hb_006355_050--Hb_000705_280 Hb_006355_050--Hb_007177_010 Hb_000638_040 Hb_000638_040 Hb_006355_050--Hb_000638_040 Hb_061637_010 Hb_061637_010 Hb_006355_050--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_006355_050--Hb_021156_030 Hb_074238_010--Hb_006355_050 Hb_074238_010--Hb_154340_010 Hb_074238_010--Hb_000638_040 Hb_074238_010--Hb_000705_280 Hb_000440_030 Hb_000440_030 Hb_074238_010--Hb_000440_030 Hb_007177_010--Hb_005020_010 Hb_000572_050 Hb_000572_050 Hb_007177_010--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_007177_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_007177_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_007177_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_007177_010--Hb_001545_250 Hb_005020_010--Hb_000971_060 Hb_005020_010--Hb_000201_020 Hb_005020_010--Hb_001545_250 Hb_005020_010--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_005020_010--Hb_010760_010 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_154340_010--Hb_000572_050 Hb_000705_280--Hb_000440_030 Hb_000705_280--Hb_000638_040 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0610477 0 0 0.0188477 0 0.0128249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0462627 1.56759 0.05536 0

CAGE analysis