Hb_000440_030

Information

Type -
Description -
Location Contig440: 62993-64769
Sequence    

Annotation

kegg
ID rcu:RCOM_0964320
description Esterase precursor, putative
nr
ID AAP41849.1
description 50 kDa protein [Hevea brasiliensis]
swissprot
ID P86276
description GDSL esterase/lipase OS=Carica papaya PE=1 SV=1
trembl
ID Q5VLJ6
description 50 kDa protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42609: 63073-64467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000440_030 0.0 - - 50 kDa protein [Hevea brasiliensis]
2 Hb_000705_280 0.1805473606 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
3 Hb_000638_040 0.1866193296 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
4 Hb_004316_090 0.1954692714 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
5 Hb_007975_040 0.2165166054 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
6 Hb_000226_100 0.2308991362 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_074238_010 0.2394754928 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
8 Hb_183672_010 0.2447528954 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
9 Hb_006355_050 0.2476656276 - - -
10 Hb_000264_220 0.2488458009 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
11 Hb_000083_040 0.2625923312 - - conserved hypothetical protein [Ricinus communis]
12 Hb_154340_010 0.2632145135 - - truncated nitrate transporter [Fragaria vesca]
13 Hb_001943_020 0.2636139215 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
14 Hb_000184_200 0.2637318696 - - -
15 Hb_001235_080 0.2650412809 - - conserved hypothetical protein [Ricinus communis]
16 Hb_060455_010 0.2673486761 - - 50 kDa protein [Hevea brasiliensis]
17 Hb_008839_030 0.267878488 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005142_010 0.2791149449 - - -
19 Hb_007177_010 0.2794675905 - - -
20 Hb_005841_030 0.2795768151 - - -

Gene co-expression network

sample Hb_000440_030 Hb_000440_030 Hb_000705_280 Hb_000705_280 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_005142_010 Hb_005142_010 Hb_000638_040--Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_000638_040--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_000638_040--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_000638_040--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000638_040--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000638_040--Hb_000201_020 Hb_004316_090--Hb_000638_040 Hb_000120_690 Hb_000120_690 Hb_004316_090--Hb_000120_690 Hb_000264_220 Hb_000264_220 Hb_004316_090--Hb_000264_220 Hb_004316_090--Hb_000705_280 Hb_004316_090--Hb_007975_040 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_007975_040--Hb_000120_690 Hb_007975_040--Hb_074238_010 Hb_007975_040--Hb_000226_100 Hb_000226_100--Hb_000264_220 Hb_000226_100--Hb_000705_280 Hb_001943_020 Hb_001943_020 Hb_000226_100--Hb_001943_020 Hb_000184_200 Hb_000184_200 Hb_000226_100--Hb_000184_200 Hb_074238_010--Hb_000083_040 Hb_074238_010--Hb_006355_050 Hb_074238_010--Hb_154340_010 Hb_074238_010--Hb_000638_040 Hb_074238_010--Hb_000705_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9184 0.0251121 4.02942 30.0588 0 0.0797671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 223.192 10.4698 2.77498

CAGE analysis