Hb_004316_090

Information

Type -
Description -
Location Contig4316: 63978-66111
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP20726.1
description hypothetical protein JCGZ_21197 [Jatropha curcas]
swissprot
ID Q1D771
description 30S ribosomal protein S19 OS=Myxococcus xanthus (strain DK 1622) GN=rpsS PE=3 SV=1
trembl
ID A0A067JAC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21197 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42276: 59081-91885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_090 0.0 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
2 Hb_000440_030 0.1954692714 - - 50 kDa protein [Hevea brasiliensis]
3 Hb_000638_040 0.2069575367 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
4 Hb_000120_690 0.2306447557 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_000264_220 0.2326526337 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
6 Hb_000705_280 0.2368677824 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
7 Hb_007975_040 0.2374886414 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
8 Hb_000038_190 0.2416391529 - - -
9 Hb_000046_150 0.2416391529 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000047_120 0.2416391529 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000062_120 0.2416391529 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
12 Hb_000094_140 0.2416391529 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
13 Hb_000100_080 0.2416391529 - - -
14 Hb_000120_830 0.2416391529 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
15 Hb_000134_060 0.2416391529 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
16 Hb_000173_450 0.2416391529 - - -
17 Hb_000175_170 0.2416391529 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
18 Hb_000181_170 0.2416391529 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
19 Hb_000298_040 0.2416391529 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000313_270 0.2416391529 - - PREDICTED: uncharacterized protein LOC105761822 [Gossypium raimondii]

Gene co-expression network

sample Hb_004316_090 Hb_004316_090 Hb_000440_030 Hb_000440_030 Hb_004316_090--Hb_000440_030 Hb_000638_040 Hb_000638_040 Hb_004316_090--Hb_000638_040 Hb_000120_690 Hb_000120_690 Hb_004316_090--Hb_000120_690 Hb_000264_220 Hb_000264_220 Hb_004316_090--Hb_000264_220 Hb_000705_280 Hb_000705_280 Hb_004316_090--Hb_000705_280 Hb_007975_040 Hb_007975_040 Hb_004316_090--Hb_007975_040 Hb_000440_030--Hb_000705_280 Hb_000440_030--Hb_000638_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_005142_010 Hb_005142_010 Hb_000638_040--Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_000638_040--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_000638_040--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_000638_040--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000638_040--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000638_040--Hb_000201_020 Hb_001235_090 Hb_001235_090 Hb_000120_690--Hb_001235_090 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010 Hb_176472_010 Hb_176472_010 Hb_000120_690--Hb_176472_010 Hb_024247_020 Hb_024247_020 Hb_000264_220--Hb_024247_020 Hb_011356_020 Hb_011356_020 Hb_000264_220--Hb_011356_020 Hb_000781_050 Hb_000781_050 Hb_000264_220--Hb_000781_050 Hb_002498_130 Hb_002498_130 Hb_000264_220--Hb_002498_130 Hb_001789_170 Hb_001789_170 Hb_000264_220--Hb_001789_170 Hb_152362_010 Hb_152362_010 Hb_000264_220--Hb_152362_010 Hb_006355_050 Hb_006355_050 Hb_000705_280--Hb_006355_050 Hb_000705_280--Hb_000638_040 Hb_000083_040 Hb_000083_040 Hb_000705_280--Hb_000083_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_154340_010 Hb_154340_010 Hb_007975_040--Hb_154340_010 Hb_007975_040--Hb_074238_010 Hb_007975_040--Hb_000226_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0227039 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.180037 0 0

CAGE analysis