Hb_152362_010

Information

Type -
Description -
Location Contig152362: 15869-17398
Sequence    

Annotation

kegg
ID rcu:RCOM_1730280
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative
nr
ID XP_002516767.1
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
swissprot
ID Q9HDV0
description Putative glutamine amidotransferase PB2B2.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB2B2.05 PE=3 SV=2
trembl
ID B9RSP8
description Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative OS=Ricinus communis GN=RCOM_1730280 PE=4 SV=1
Gene Ontology
ID GO:0016787
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152362_010 0.0 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
2 Hb_000264_220 0.2208428252 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
3 Hb_006907_090 0.2784606097 - - -
4 Hb_002999_040 0.282448116 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000440_030 0.2927094815 - - 50 kDa protein [Hevea brasiliensis]
6 Hb_002498_130 0.2979120878 - - hypothetical protein POPTR_0004s00980g [Populus trichocarpa]
7 Hb_000781_050 0.2979567206 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_011356_020 0.2988189285 - - -
9 Hb_004316_090 0.2993685702 - - hypothetical protein JCGZ_21197 [Jatropha curcas]
10 Hb_001789_170 0.2998509375 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
11 Hb_005599_060 0.305455253 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
12 Hb_001818_030 0.3055262104 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_000392_290 0.3073053008 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_024247_020 0.3111787131 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
15 Hb_000226_100 0.3126108711 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_183672_010 0.3142870664 - - PREDICTED: (S)-tetrahydroprotoberberine N-methyltransferase isoform X3 [Jatropha curcas]
17 Hb_011249_040 0.3187976753 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
18 Hb_139691_010 0.3219989854 - - -
19 Hb_008035_050 0.3256352314 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
20 Hb_003659_020 0.327594714 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]

Gene co-expression network

sample Hb_152362_010 Hb_152362_010 Hb_000264_220 Hb_000264_220 Hb_152362_010--Hb_000264_220 Hb_006907_090 Hb_006907_090 Hb_152362_010--Hb_006907_090 Hb_002999_040 Hb_002999_040 Hb_152362_010--Hb_002999_040 Hb_000440_030 Hb_000440_030 Hb_152362_010--Hb_000440_030 Hb_002498_130 Hb_002498_130 Hb_152362_010--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_152362_010--Hb_000781_050 Hb_024247_020 Hb_024247_020 Hb_000264_220--Hb_024247_020 Hb_011356_020 Hb_011356_020 Hb_000264_220--Hb_011356_020 Hb_000264_220--Hb_000781_050 Hb_000264_220--Hb_002498_130 Hb_001789_170 Hb_001789_170 Hb_000264_220--Hb_001789_170 Hb_015475_010 Hb_015475_010 Hb_006907_090--Hb_015475_010 Hb_001060_080 Hb_001060_080 Hb_006907_090--Hb_001060_080 Hb_000120_690 Hb_000120_690 Hb_006907_090--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_006907_090--Hb_001235_090 Hb_006788_080 Hb_006788_080 Hb_006907_090--Hb_006788_080 Hb_001818_030 Hb_001818_030 Hb_002999_040--Hb_001818_030 Hb_003581_180 Hb_003581_180 Hb_002999_040--Hb_003581_180 Hb_000856_160 Hb_000856_160 Hb_002999_040--Hb_000856_160 Hb_000925_040 Hb_000925_040 Hb_002999_040--Hb_000925_040 Hb_003659_020 Hb_003659_020 Hb_002999_040--Hb_003659_020 Hb_000705_280 Hb_000705_280 Hb_000440_030--Hb_000705_280 Hb_000638_040 Hb_000638_040 Hb_000440_030--Hb_000638_040 Hb_004316_090 Hb_004316_090 Hb_000440_030--Hb_004316_090 Hb_007975_040 Hb_007975_040 Hb_000440_030--Hb_007975_040 Hb_000226_100 Hb_000226_100 Hb_000440_030--Hb_000226_100 Hb_074238_010 Hb_074238_010 Hb_000440_030--Hb_074238_010 Hb_002498_130--Hb_000781_050 Hb_002498_130--Hb_011356_020 Hb_002498_130--Hb_001789_170 Hb_000392_290 Hb_000392_290 Hb_002498_130--Hb_000392_290 Hb_002498_130--Hb_024247_020 Hb_139691_010 Hb_139691_010 Hb_002498_130--Hb_139691_010 Hb_000781_050--Hb_011356_020 Hb_000781_050--Hb_001789_170 Hb_000781_050--Hb_000392_290 Hb_000781_050--Hb_024247_020 Hb_000781_050--Hb_139691_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0125094 0.013723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.056154 0 0

CAGE analysis