Hb_003581_180

Information

Type -
Description -
Location Contig3581: 146589-148270
Sequence    

Annotation

kegg
ID rcu:RCOM_0697960
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002520133.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID Q9SRH4
description Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1
trembl
ID B9S2B4
description Pectate lyase OS=Ricinus communis GN=RCOM_0697960 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36955: 147415-147780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_180 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_001818_030 0.2257326384 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_002999_040 0.2441286431 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000025_170 0.2536555111 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002301_090 0.2676998765 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
6 Hb_000179_260 0.2851385681 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
7 Hb_004228_060 0.2876280914 - - Tubulin beta-2 chain [Triticum urartu]
8 Hb_000925_040 0.3023510229 - - kinase, putative [Ricinus communis]
9 Hb_000010_450 0.3072849075 - - purine permease, putative [Ricinus communis]
10 Hb_004410_040 0.309254432 - - ATP binding protein, putative [Ricinus communis]
11 Hb_003861_030 0.3100014205 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
12 Hb_012092_100 0.3172548336 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004324_230 0.328499291 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
14 Hb_002685_050 0.3307760513 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_002701_230 0.335859629 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]
16 Hb_002157_200 0.3396688324 - - hypothetical protein VITISV_040170 [Vitis vinifera]
17 Hb_002641_040 0.3438691787 - - class III peroxidase [Populus trichocarpa]
18 Hb_002942_150 0.3559499254 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_011360_130 0.3566787727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000215_370 0.3597932435 - - myoinositol oxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003581_180 Hb_003581_180 Hb_001818_030 Hb_001818_030 Hb_003581_180--Hb_001818_030 Hb_002999_040 Hb_002999_040 Hb_003581_180--Hb_002999_040 Hb_000025_170 Hb_000025_170 Hb_003581_180--Hb_000025_170 Hb_002301_090 Hb_002301_090 Hb_003581_180--Hb_002301_090 Hb_000179_260 Hb_000179_260 Hb_003581_180--Hb_000179_260 Hb_004228_060 Hb_004228_060 Hb_003581_180--Hb_004228_060 Hb_001818_030--Hb_002999_040 Hb_000856_160 Hb_000856_160 Hb_001818_030--Hb_000856_160 Hb_000925_040 Hb_000925_040 Hb_001818_030--Hb_000925_040 Hb_152362_010 Hb_152362_010 Hb_001818_030--Hb_152362_010 Hb_015475_010 Hb_015475_010 Hb_001818_030--Hb_015475_010 Hb_002999_040--Hb_000856_160 Hb_002999_040--Hb_152362_010 Hb_002999_040--Hb_000925_040 Hb_003659_020 Hb_003659_020 Hb_002999_040--Hb_003659_020 Hb_000878_140 Hb_000878_140 Hb_000025_170--Hb_000878_140 Hb_005725_150 Hb_005725_150 Hb_000025_170--Hb_005725_150 Hb_001946_350 Hb_001946_350 Hb_000025_170--Hb_001946_350 Hb_007904_250 Hb_007904_250 Hb_000025_170--Hb_007904_250 Hb_001890_020 Hb_001890_020 Hb_000025_170--Hb_001890_020 Hb_002631_190 Hb_002631_190 Hb_002301_090--Hb_002631_190 Hb_012092_100 Hb_012092_100 Hb_002301_090--Hb_012092_100 Hb_008864_100 Hb_008864_100 Hb_002301_090--Hb_008864_100 Hb_005276_030 Hb_005276_030 Hb_002301_090--Hb_005276_030 Hb_003861_030 Hb_003861_030 Hb_002301_090--Hb_003861_030 Hb_027445_070 Hb_027445_070 Hb_000179_260--Hb_027445_070 Hb_001688_100 Hb_001688_100 Hb_000179_260--Hb_001688_100 Hb_023386_070 Hb_023386_070 Hb_000179_260--Hb_023386_070 Hb_001205_280 Hb_001205_280 Hb_000179_260--Hb_001205_280 Hb_001565_090 Hb_001565_090 Hb_000179_260--Hb_001565_090 Hb_000661_150 Hb_000661_150 Hb_000179_260--Hb_000661_150 Hb_004324_230 Hb_004324_230 Hb_004228_060--Hb_004324_230 Hb_002843_200 Hb_002843_200 Hb_004228_060--Hb_002843_200 Hb_000010_450 Hb_000010_450 Hb_004228_060--Hb_000010_450 Hb_182291_010 Hb_182291_010 Hb_004228_060--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_004228_060--Hb_002049_040 Hb_004598_010 Hb_004598_010 Hb_004228_060--Hb_004598_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158418 0 0.132516 0.0365429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0531341 0 0

CAGE analysis