Hb_002631_190

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2631: 151787-153110
Sequence    

Annotation

kegg
ID rcu:RCOM_1574660
description DELLA protein GAI1, putative
nr
ID XP_002513361.1
description DELLA protein GAI1, putative [Ricinus communis]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID B9RHZ2
description DELLA protein GAI1, putative OS=Ricinus communis GN=RCOM_1574660 PE=4 SV=1
Gene Ontology
ID GO:0006351
description della protein rgl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27472: 152701-152818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_190 0.0 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
2 Hb_012092_100 0.2236446644 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000925_040 0.2427038101 - - kinase, putative [Ricinus communis]
4 Hb_008864_100 0.2609557512 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
5 Hb_000010_300 0.261863498 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
6 Hb_001493_160 0.2632346571 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
7 Hb_002301_090 0.2639744286 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
8 Hb_001268_320 0.2752975913 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
9 Hb_000320_260 0.302255337 - - unnamed protein product [Vitis vinifera]
10 Hb_183086_070 0.3041176234 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
11 Hb_008725_070 0.3046269993 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
12 Hb_006472_080 0.304888875 - - -
13 Hb_006472_070 0.3118609352 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_010377_020 0.3126438107 - - -
15 Hb_015475_010 0.3126694811 - - hypothetical protein VITISV_034342 [Vitis vinifera]
16 Hb_105959_010 0.3154174076 - - asparagine synthetase, putative [Ricinus communis]
17 Hb_006289_020 0.315539673 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
18 Hb_032717_070 0.3209743635 - - PREDICTED: mucin-2-like [Jatropha curcas]
19 Hb_000028_490 0.3216210651 - - calmodulin-like protein 6a [Populus trichocarpa]
20 Hb_007810_090 0.3220591624 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]

Gene co-expression network

sample Hb_002631_190 Hb_002631_190 Hb_012092_100 Hb_012092_100 Hb_002631_190--Hb_012092_100 Hb_000925_040 Hb_000925_040 Hb_002631_190--Hb_000925_040 Hb_008864_100 Hb_008864_100 Hb_002631_190--Hb_008864_100 Hb_000010_300 Hb_000010_300 Hb_002631_190--Hb_000010_300 Hb_001493_160 Hb_001493_160 Hb_002631_190--Hb_001493_160 Hb_002301_090 Hb_002301_090 Hb_002631_190--Hb_002301_090 Hb_012092_100--Hb_008864_100 Hb_012092_100--Hb_000925_040 Hb_012092_100--Hb_000010_300 Hb_006472_070 Hb_006472_070 Hb_012092_100--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_012092_100--Hb_006289_020 Hb_000925_040--Hb_000010_300 Hb_015475_010 Hb_015475_010 Hb_000925_040--Hb_015475_010 Hb_000320_260 Hb_000320_260 Hb_000925_040--Hb_000320_260 Hb_000302_210 Hb_000302_210 Hb_000925_040--Hb_000302_210 Hb_008864_100--Hb_006289_020 Hb_003119_040 Hb_003119_040 Hb_008864_100--Hb_003119_040 Hb_003878_060 Hb_003878_060 Hb_008864_100--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_008864_100--Hb_000236_480 Hb_000260_610 Hb_000260_610 Hb_008864_100--Hb_000260_610 Hb_000010_300--Hb_000320_260 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_000010_300--Hb_006472_070 Hb_000010_300--Hb_006289_020 Hb_072997_010 Hb_072997_010 Hb_001493_160--Hb_072997_010 Hb_012754_020 Hb_012754_020 Hb_001493_160--Hb_012754_020 Hb_001416_170 Hb_001416_170 Hb_001493_160--Hb_001416_170 Hb_055147_020 Hb_055147_020 Hb_001493_160--Hb_055147_020 Hb_004096_010 Hb_004096_010 Hb_001493_160--Hb_004096_010 Hb_183086_070 Hb_183086_070 Hb_001493_160--Hb_183086_070 Hb_003581_180 Hb_003581_180 Hb_002301_090--Hb_003581_180 Hb_002301_090--Hb_012092_100 Hb_002301_090--Hb_008864_100 Hb_005276_030 Hb_005276_030 Hb_002301_090--Hb_005276_030 Hb_003861_030 Hb_003861_030 Hb_002301_090--Hb_003861_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283163 0.0285674 0.109059 0.146597 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0928382 0.041408 0

CAGE analysis