Hb_000302_210

Information

Type -
Description -
Location Contig302: 144029-147394
Sequence    

Annotation

kegg
ID rcu:RCOM_1582010
description hypothetical protein
nr
ID XP_002513642.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LTD8
description DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2
trembl
ID B9RIS3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000985_070 0.1972819104 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
3 Hb_012754_020 0.2101931931 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
4 Hb_098785_010 0.2198212597 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_000125_220 0.2230965989 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
6 Hb_003799_020 0.224494025 - - hypothetical protein VITISV_003261 [Vitis vinifera]
7 Hb_000925_040 0.278819346 - - kinase, putative [Ricinus communis]
8 Hb_006472_070 0.2794537139 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_000085_390 0.301901774 - - unnamed protein product [Vitis vinifera]
10 Hb_003747_110 0.3048075515 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
11 Hb_000579_050 0.3186784121 - - PREDICTED: peroxidase 9 [Jatropha curcas]
12 Hb_001221_280 0.3202725749 - - -
13 Hb_012092_100 0.3226604397 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000010_300 0.3247604903 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
15 Hb_014068_020 0.3263391293 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
16 Hb_164162_010 0.3270384237 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
17 Hb_006472_080 0.3275715822 - - -
18 Hb_002631_190 0.3411502083 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
19 Hb_015475_010 0.3430084378 - - hypothetical protein VITISV_034342 [Vitis vinifera]
20 Hb_011437_030 0.3442318515 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]

Gene co-expression network

sample Hb_000302_210 Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_000302_210--Hb_000985_070 Hb_012754_020 Hb_012754_020 Hb_000302_210--Hb_012754_020 Hb_098785_010 Hb_098785_010 Hb_000302_210--Hb_098785_010 Hb_000125_220 Hb_000125_220 Hb_000302_210--Hb_000125_220 Hb_003799_020 Hb_003799_020 Hb_000302_210--Hb_003799_020 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_164162_010 Hb_164162_010 Hb_000985_070--Hb_164162_010 Hb_000985_070--Hb_012754_020 Hb_000985_070--Hb_000125_220 Hb_014068_020 Hb_014068_020 Hb_000985_070--Hb_014068_020 Hb_000985_070--Hb_098785_010 Hb_003185_090 Hb_003185_090 Hb_012754_020--Hb_003185_090 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_012754_020--Hb_164162_010 Hb_012754_020--Hb_000125_220 Hb_098785_010--Hb_000125_220 Hb_006569_070 Hb_006569_070 Hb_098785_010--Hb_006569_070 Hb_098785_010--Hb_003799_020 Hb_001221_280 Hb_001221_280 Hb_098785_010--Hb_001221_280 Hb_000085_390 Hb_000085_390 Hb_000125_220--Hb_000085_390 Hb_012092_100 Hb_012092_100 Hb_000125_220--Hb_012092_100 Hb_003747_110 Hb_003747_110 Hb_003799_020--Hb_003747_110 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_006788_080 Hb_006788_080 Hb_003799_020--Hb_006788_080 Hb_000925_040--Hb_012092_100 Hb_000010_300 Hb_000010_300 Hb_000925_040--Hb_000010_300 Hb_015475_010 Hb_015475_010 Hb_000925_040--Hb_015475_010 Hb_002631_190 Hb_002631_190 Hb_000925_040--Hb_002631_190 Hb_000320_260 Hb_000320_260 Hb_000925_040--Hb_000320_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0226769 0.0607446 0.0171227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0772044 0.0325554 0

CAGE analysis