Hb_000985_070

Information

Type -
Description -
Location Contig985: 122604-123536
Sequence    

Annotation

kegg
ID rcu:RCOM_1213160
description hypothetical protein
nr
ID XP_012089605.1
description PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SF25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1213160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000985_070 0.0 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
2 Hb_164162_010 0.1570343892 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
3 Hb_012754_020 0.1617101354 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
4 Hb_000302_210 0.1972819104 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000125_220 0.203518257 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
6 Hb_014068_020 0.2361375252 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
7 Hb_098785_010 0.2529155759 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_006472_070 0.2649371336 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_012092_100 0.2765468448 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001016_140 0.2874774449 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
11 Hb_000062_290 0.2926642056 desease resistance Gene Name: ABC_membrane hypothetical protein POPTR_0008s17960g [Populus trichocarpa]
12 Hb_003799_020 0.294255983 - - hypothetical protein VITISV_003261 [Vitis vinifera]
13 Hb_003747_110 0.3075893895 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
14 Hb_003185_090 0.3083713712 - - Boron transporter, putative [Ricinus communis]
15 Hb_002477_100 0.3124503953 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
16 Hb_002045_260 0.3128645348 - - calmodulin, putative [Ricinus communis]
17 Hb_000579_050 0.3129143773 - - PREDICTED: peroxidase 9 [Jatropha curcas]
18 Hb_001699_120 0.3151706383 - - Protein P21, putative [Ricinus communis]
19 Hb_003751_100 0.3153267785 - - Amino acid permease 2 [Glycine soja]
20 Hb_000085_390 0.3193744438 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000985_070 Hb_000985_070 Hb_164162_010 Hb_164162_010 Hb_000985_070--Hb_164162_010 Hb_012754_020 Hb_012754_020 Hb_000985_070--Hb_012754_020 Hb_000302_210 Hb_000302_210 Hb_000985_070--Hb_000302_210 Hb_000125_220 Hb_000125_220 Hb_000985_070--Hb_000125_220 Hb_014068_020 Hb_014068_020 Hb_000985_070--Hb_014068_020 Hb_098785_010 Hb_098785_010 Hb_000985_070--Hb_098785_010 Hb_164162_010--Hb_012754_020 Hb_002045_260 Hb_002045_260 Hb_164162_010--Hb_002045_260 Hb_006478_140 Hb_006478_140 Hb_164162_010--Hb_006478_140 Hb_003751_100 Hb_003751_100 Hb_164162_010--Hb_003751_100 Hb_002374_360 Hb_002374_360 Hb_164162_010--Hb_002374_360 Hb_003185_090 Hb_003185_090 Hb_012754_020--Hb_003185_090 Hb_012754_020--Hb_000302_210 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_012754_020--Hb_000125_220 Hb_000302_210--Hb_098785_010 Hb_000302_210--Hb_000125_220 Hb_003799_020 Hb_003799_020 Hb_000302_210--Hb_003799_020 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_000085_390 Hb_000085_390 Hb_000125_220--Hb_000085_390 Hb_000125_220--Hb_098785_010 Hb_012092_100 Hb_012092_100 Hb_000125_220--Hb_012092_100 Hb_014068_020--Hb_164162_010 Hb_000042_370 Hb_000042_370 Hb_014068_020--Hb_000042_370 Hb_014068_020--Hb_012092_100 Hb_000000_130 Hb_000000_130 Hb_014068_020--Hb_000000_130 Hb_014068_020--Hb_000125_220 Hb_006569_070 Hb_006569_070 Hb_098785_010--Hb_006569_070 Hb_098785_010--Hb_003799_020 Hb_001221_280 Hb_001221_280 Hb_098785_010--Hb_001221_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0685859 0.185034 0.0211917 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0796513 0.0700691 0

CAGE analysis