Hb_000000_130

Information

Type -
Description -
Location Contig0: 212752-214451
Sequence    

Annotation

kegg
ID tcc:TCM_033968
description Disease resistance-responsive family protein
nr
ID XP_007017433.1
description Disease resistance-responsive family protein [Theobroma cacao]
swissprot
ID Q9SUQ8
description Dirigent protein 6 OS=Arabidopsis thaliana GN=DIR6 PE=1 SV=1
trembl
ID A0A061FCR4
description Disease resistance-responsive family protein OS=Theobroma cacao GN=TCM_033968 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dirigent protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_130 0.0 - - Disease resistance-responsive family protein [Theobroma cacao]
2 Hb_116420_050 0.1763434214 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
3 Hb_027065_010 0.1896652373 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_000170_080 0.1905745124 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
5 Hb_002999_150 0.1976649767 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
6 Hb_003787_050 0.198090281 - - conserved hypothetical protein [Ricinus communis]
7 Hb_107174_010 0.2019654704 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_003207_220 0.2035765596 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
9 Hb_127372_010 0.2078930454 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
10 Hb_001007_090 0.2085203835 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
11 Hb_002435_010 0.2132059257 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
12 Hb_000953_180 0.2166232743 - - -
13 Hb_052764_120 0.2169772688 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
14 Hb_008878_010 0.2172843727 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
15 Hb_000192_030 0.217806705 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
16 Hb_155896_010 0.2184397185 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
17 Hb_031266_020 0.2190117082 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
18 Hb_010223_010 0.2203834844 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_000215_150 0.2218913048 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
20 Hb_002267_010 0.2227988688 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]

Gene co-expression network

sample Hb_000000_130 Hb_000000_130 Hb_116420_050 Hb_116420_050 Hb_000000_130--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000000_130--Hb_027065_010 Hb_000170_080 Hb_000170_080 Hb_000000_130--Hb_000170_080 Hb_002999_150 Hb_002999_150 Hb_000000_130--Hb_002999_150 Hb_003787_050 Hb_003787_050 Hb_000000_130--Hb_003787_050 Hb_107174_010 Hb_107174_010 Hb_000000_130--Hb_107174_010 Hb_116420_050--Hb_027065_010 Hb_127372_010 Hb_127372_010 Hb_116420_050--Hb_127372_010 Hb_003207_220 Hb_003207_220 Hb_116420_050--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_000866_430 Hb_000866_430 Hb_116420_050--Hb_000866_430 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_027065_010--Hb_003207_220 Hb_027065_010--Hb_000866_430 Hb_027065_010--Hb_000042_020 Hb_000215_150 Hb_000215_150 Hb_000170_080--Hb_000215_150 Hb_000170_080--Hb_007919_070 Hb_001007_090 Hb_001007_090 Hb_000170_080--Hb_001007_090 Hb_003935_050 Hb_003935_050 Hb_000170_080--Hb_003935_050 Hb_000140_250 Hb_000140_250 Hb_000170_080--Hb_000140_250 Hb_002999_150--Hb_003207_220 Hb_002999_150--Hb_107174_010 Hb_052764_120 Hb_052764_120 Hb_002999_150--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002999_150--Hb_002267_010 Hb_071654_010 Hb_071654_010 Hb_002999_150--Hb_071654_010 Hb_007894_040 Hb_007894_040 Hb_002999_150--Hb_007894_040 Hb_000540_210 Hb_000540_210 Hb_003787_050--Hb_000540_210 Hb_003787_050--Hb_027065_010 Hb_002435_010 Hb_002435_010 Hb_003787_050--Hb_002435_010 Hb_003787_050--Hb_116420_050 Hb_000340_070 Hb_000340_070 Hb_003787_050--Hb_000340_070 Hb_010223_010 Hb_010223_010 Hb_107174_010--Hb_010223_010 Hb_000192_030 Hb_000192_030 Hb_107174_010--Hb_000192_030 Hb_107174_010--Hb_003207_220 Hb_107174_010--Hb_007894_040 Hb_107174_010--Hb_071654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09025 2.87839 0.311331 0 0.0671099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10328 0 0.141638 0.0333167 0

CAGE analysis