Hb_000215_150

Information

Type -
Description -
Location Contig215: 125530-126162
Sequence    

Annotation

kegg
ID vvi:100249186
description uncharacterized LOC100249186
nr
ID XP_002280262.1
description PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9RKG1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049080 PE=4 SV=1
Gene Ontology
ID GO:0050896
description oxidative stress 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22186: 125402-126302
cDNA
(Sanger)
(ID:Location)		 027_O07.ab1: 125402-126292

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_150 0.0 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
2 Hb_000388_040 0.1344366919 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
3 Hb_000115_190 0.1505424439 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
4 Hb_001143_200 0.1532085379 transcription factor TF Family: NAC NAC domain protein [Glycine max]
5 Hb_008878_010 0.1546177265 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
6 Hb_003767_030 0.1561284356 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
7 Hb_007919_070 0.1580955503 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
8 Hb_003935_050 0.1613079455 - - protein with unknown function [Ricinus communis]
9 Hb_000349_170 0.1649166075 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
10 Hb_163140_010 0.168451099 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
11 Hb_000170_080 0.169289 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
12 Hb_028187_010 0.17133073 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
13 Hb_005695_070 0.1761462701 - - Cysteine-rich RLK 29 [Theobroma cacao]
14 Hb_000140_250 0.1781732384 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
15 Hb_012753_150 0.1789907041 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
16 Hb_014700_020 0.179019613 - - tryptophan synthase beta chain, putative [Ricinus communis]
17 Hb_031266_030 0.1800873315 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
18 Hb_009421_090 0.1806842109 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
19 Hb_002221_010 0.1826364009 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
20 Hb_003599_060 0.1827638315 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000215_150 Hb_000215_150 Hb_000388_040 Hb_000388_040 Hb_000215_150--Hb_000388_040 Hb_000115_190 Hb_000115_190 Hb_000215_150--Hb_000115_190 Hb_001143_200 Hb_001143_200 Hb_000215_150--Hb_001143_200 Hb_008878_010 Hb_008878_010 Hb_000215_150--Hb_008878_010 Hb_003767_030 Hb_003767_030 Hb_000215_150--Hb_003767_030 Hb_007919_070 Hb_007919_070 Hb_000215_150--Hb_007919_070 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_001040_050 Hb_001040_050 Hb_000115_190--Hb_001040_050 Hb_000028_250 Hb_000028_250 Hb_000115_190--Hb_000028_250 Hb_006519_020 Hb_006519_020 Hb_000115_190--Hb_006519_020 Hb_002447_060 Hb_002447_060 Hb_000115_190--Hb_002447_060 Hb_000115_190--Hb_000388_040 Hb_005162_120 Hb_005162_120 Hb_000115_190--Hb_005162_120 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001143_200--Hb_001040_050 Hb_001143_200--Hb_007441_290 Hb_001143_200--Hb_000388_040 Hb_001007_090 Hb_001007_090 Hb_008878_010--Hb_001007_090 Hb_031266_020 Hb_031266_020 Hb_008878_010--Hb_031266_020 Hb_007101_250 Hb_007101_250 Hb_008878_010--Hb_007101_250 Hb_003599_060 Hb_003599_060 Hb_008878_010--Hb_003599_060 Hb_004551_010 Hb_004551_010 Hb_008878_010--Hb_004551_010 Hb_003767_030--Hb_000349_170 Hb_009421_090 Hb_009421_090 Hb_003767_030--Hb_009421_090 Hb_000283_090 Hb_000283_090 Hb_003767_030--Hb_000283_090 Hb_003767_030--Hb_010267_020 Hb_000809_220 Hb_000809_220 Hb_003767_030--Hb_000809_220 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_007919_070--Hb_000349_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0605973 7.6432 44.9199 7.31894 0.0447593 0.321347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.443478 0.174245 2.11273 0.179352 2.83634

CAGE analysis