Hb_008878_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig8878: 7472-9210
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04780g
description POPTRDRAFT_654710; hypothetical protein
nr
ID XP_011022862.1
description PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
swissprot
ID Q39013
description NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2
trembl
ID B9HF58
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04780g PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61525: 7114-9139
cDNA
(Sanger)
(ID:Location)		 012_O09.ab1: 7808-9137

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008878_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
2 Hb_001007_090 0.1197168217 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
3 Hb_031266_020 0.1442710774 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
4 Hb_007101_250 0.1503497893 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
5 Hb_003599_060 0.1511134113 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_004551_010 0.1513695174 - - tryptophan synthase beta chain, putative [Ricinus communis]
7 Hb_000215_150 0.1546177265 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
8 Hb_000134_260 0.1581111846 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_116420_050 0.1592921873 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
10 Hb_003058_030 0.1594036668 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000142_030 0.1675721904 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_001143_200 0.1716481879 transcription factor TF Family: NAC NAC domain protein [Glycine max]
13 Hb_000042_020 0.1724400224 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_002374_200 0.1750865983 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
15 Hb_031266_030 0.1758723704 - - Kinase superfamily protein isoform 1 [Theobroma cacao]
16 Hb_001396_040 0.1807893031 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
17 Hb_007919_070 0.1874769508 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
18 Hb_004970_070 0.1900483414 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
19 Hb_008115_030 0.1933779725 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
20 Hb_000866_430 0.1948871492 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]

Gene co-expression network

sample Hb_008878_010 Hb_008878_010 Hb_001007_090 Hb_001007_090 Hb_008878_010--Hb_001007_090 Hb_031266_020 Hb_031266_020 Hb_008878_010--Hb_031266_020 Hb_007101_250 Hb_007101_250 Hb_008878_010--Hb_007101_250 Hb_003599_060 Hb_003599_060 Hb_008878_010--Hb_003599_060 Hb_004551_010 Hb_004551_010 Hb_008878_010--Hb_004551_010 Hb_000215_150 Hb_000215_150 Hb_008878_010--Hb_000215_150 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_001007_090--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_001007_090--Hb_116420_050 Hb_031266_020--Hb_004551_010 Hb_000592_070 Hb_000592_070 Hb_031266_020--Hb_000592_070 Hb_009252_090 Hb_009252_090 Hb_031266_020--Hb_009252_090 Hb_002048_100 Hb_002048_100 Hb_031266_020--Hb_002048_100 Hb_002133_010 Hb_002133_010 Hb_031266_020--Hb_002133_010 Hb_031266_020--Hb_000134_260 Hb_000574_270 Hb_000574_270 Hb_007101_250--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_007101_250--Hb_000483_050 Hb_000365_110 Hb_000365_110 Hb_007101_250--Hb_000365_110 Hb_150745_010 Hb_150745_010 Hb_007101_250--Hb_150745_010 Hb_000142_030 Hb_000142_030 Hb_007101_250--Hb_000142_030 Hb_003599_060--Hb_000142_030 Hb_031266_030 Hb_031266_030 Hb_003599_060--Hb_031266_030 Hb_012753_150 Hb_012753_150 Hb_003599_060--Hb_012753_150 Hb_014497_070 Hb_014497_070 Hb_003599_060--Hb_014497_070 Hb_006060_010 Hb_006060_010 Hb_003599_060--Hb_006060_010 Hb_003878_060 Hb_003878_060 Hb_003599_060--Hb_003878_060 Hb_004551_010--Hb_000134_260 Hb_004551_010--Hb_009252_090 Hb_001660_080 Hb_001660_080 Hb_004551_010--Hb_001660_080 Hb_002374_200 Hb_002374_200 Hb_004551_010--Hb_002374_200 Hb_000035_140 Hb_000035_140 Hb_004551_010--Hb_000035_140 Hb_000388_040 Hb_000388_040 Hb_000215_150--Hb_000388_040 Hb_000115_190 Hb_000115_190 Hb_000215_150--Hb_000115_190 Hb_001143_200 Hb_001143_200 Hb_000215_150--Hb_001143_200 Hb_003767_030 Hb_003767_030 Hb_000215_150--Hb_003767_030 Hb_007919_070 Hb_007919_070 Hb_000215_150--Hb_007919_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77497 168.164 561.039 113.518 0.245616 0.346923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.262 29.5464 26.4724 12.6833 23.2051

CAGE analysis