Hb_001007_090

Information

Type -
Description -
Location Contig1007: 153954-155296
Sequence    

Annotation

kegg
ID tcc:TCM_024484
description Dehydration-induced protein, putative
nr
ID XP_012085962.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
swissprot
ID Q39096
description Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1
trembl
ID A0A067K1V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1
Gene Ontology
ID GO:0006970
description protein early responsive to dehydration 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00457: 153364-155465 , PASA_asmbl_00458: 154055-155298 , PASA_asmbl_00459: 153364-155465
cDNA
(Sanger)
(ID:Location)		 005_I24.ab1: 153364-155135 , 013_E03.ab1: 153364-155297 , 020_F24.ab1: 153364-155296 , 050_N19.ab1: 153368-154785 , 053_J17.ab1: 153368-154785

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_090 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
2 Hb_008878_010 0.1197168217 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
3 Hb_000521_190 0.1235015339 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
4 Hb_000134_260 0.1482334695 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_176472_020 0.1533655452 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000866_430 0.1572806919 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
7 Hb_116420_050 0.1594135434 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
8 Hb_031266_020 0.1635052629 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
9 Hb_004970_070 0.1686381847 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
10 Hb_003058_030 0.1700255815 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000162_130 0.1700529047 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004551_010 0.1708224071 - - tryptophan synthase beta chain, putative [Ricinus communis]
13 Hb_000042_020 0.1750517644 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_004586_310 0.1759755955 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000577_050 0.1786045773 - - -
16 Hb_002374_200 0.1792303439 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
17 Hb_004712_090 0.1813713215 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
18 Hb_007101_250 0.1820975363 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
19 Hb_005375_060 0.182187938 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
20 Hb_000170_080 0.1845081316 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]

Gene co-expression network

sample Hb_001007_090 Hb_001007_090 Hb_008878_010 Hb_008878_010 Hb_001007_090--Hb_008878_010 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_001007_090--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_001007_090--Hb_116420_050 Hb_031266_020 Hb_031266_020 Hb_008878_010--Hb_031266_020 Hb_007101_250 Hb_007101_250 Hb_008878_010--Hb_007101_250 Hb_003599_060 Hb_003599_060 Hb_008878_010--Hb_003599_060 Hb_004551_010 Hb_004551_010 Hb_008878_010--Hb_004551_010 Hb_000215_150 Hb_000215_150 Hb_008878_010--Hb_000215_150 Hb_000521_190--Hb_176472_020 Hb_000521_190--Hb_000866_430 Hb_004586_310 Hb_004586_310 Hb_000521_190--Hb_004586_310 Hb_002151_130 Hb_002151_130 Hb_000521_190--Hb_002151_130 Hb_000521_190--Hb_116420_050 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_007919_070 Hb_007919_070 Hb_000866_430--Hb_007919_070 Hb_027065_010 Hb_027065_010 Hb_000866_430--Hb_027065_010 Hb_000866_430--Hb_116420_050 Hb_000251_170 Hb_000251_170 Hb_000866_430--Hb_000251_170 Hb_155896_010 Hb_155896_010 Hb_000866_430--Hb_155896_010 Hb_116420_050--Hb_027065_010 Hb_127372_010 Hb_127372_010 Hb_116420_050--Hb_127372_010 Hb_003207_220 Hb_003207_220 Hb_116420_050--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_116420_050--Hb_000042_020 Hb_116420_050--Hb_007919_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2669 660.551 1785.51 314.592 12.7753 20.4818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4091 83.3878 35.4816 55.9338 57.6936

CAGE analysis