Hb_002133_010

Information

Type -
Description -
Location Contig2133: 23314-27148
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00710g
description POPTRDRAFT_570685; putative xyloglucan endotransglycosylase family protein
nr
ID XP_012074087.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
swissprot
ID Q38910
description Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1
trembl
ID A0A067KX47
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_08703 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22072: 23236-24562
cDNA
(Sanger)
(ID:Location)		 001_E22.ab1: 23578-24556 , 010_M18.ab1: 23733-24556 , 010_M19.ab1: 23640-24556

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002133_010 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
2 Hb_000592_070 0.0572369323 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
3 Hb_012400_020 0.1042965023 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_000997_130 0.1174231822 - - DNA binding protein, putative [Ricinus communis]
5 Hb_164577_010 0.1179012394 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_000069_530 0.1180153377 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
7 Hb_009252_090 0.1182841306 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_000665_090 0.1185529429 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007546_010 0.1213078826 - - unnamed protein product [Vitis vinifera]
10 Hb_046610_010 0.1240493768 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_128083_010 0.1244086466 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
12 Hb_003060_150 0.1253666718 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000164_160 0.1253995799 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
14 Hb_064885_010 0.1259980247 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
15 Hb_004612_020 0.1273935697 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
16 Hb_002048_100 0.1305352139 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
17 Hb_000256_180 0.1314581318 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
18 Hb_031266_020 0.1317514093 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
19 Hb_004899_010 0.1331808587 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
20 Hb_116103_010 0.1381141566 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002133_010 Hb_002133_010 Hb_000592_070 Hb_000592_070 Hb_002133_010--Hb_000592_070 Hb_012400_020 Hb_012400_020 Hb_002133_010--Hb_012400_020 Hb_000997_130 Hb_000997_130 Hb_002133_010--Hb_000997_130 Hb_164577_010 Hb_164577_010 Hb_002133_010--Hb_164577_010 Hb_000069_530 Hb_000069_530 Hb_002133_010--Hb_000069_530 Hb_009252_090 Hb_009252_090 Hb_002133_010--Hb_009252_090 Hb_000592_070--Hb_012400_020 Hb_000592_070--Hb_009252_090 Hb_000592_070--Hb_000069_530 Hb_031266_020 Hb_031266_020 Hb_000592_070--Hb_031266_020 Hb_003060_150 Hb_003060_150 Hb_000592_070--Hb_003060_150 Hb_012400_020--Hb_009252_090 Hb_021142_030 Hb_021142_030 Hb_012400_020--Hb_021142_030 Hb_046610_010 Hb_046610_010 Hb_012400_020--Hb_046610_010 Hb_012400_020--Hb_000997_130 Hb_002289_180 Hb_002289_180 Hb_000997_130--Hb_002289_180 Hb_000997_130--Hb_046610_010 Hb_000997_130--Hb_164577_010 Hb_007546_010 Hb_007546_010 Hb_000997_130--Hb_007546_010 Hb_000164_160 Hb_000164_160 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010 Hb_164577_010--Hb_046610_010 Hb_164577_010--Hb_007546_010 Hb_008637_020 Hb_008637_020 Hb_164577_010--Hb_008637_020 Hb_164577_010--Hb_002289_180 Hb_000819_020 Hb_000819_020 Hb_164577_010--Hb_000819_020 Hb_005381_010 Hb_005381_010 Hb_000069_530--Hb_005381_010 Hb_000069_530--Hb_003060_150 Hb_121540_010 Hb_121540_010 Hb_000069_530--Hb_121540_010 Hb_077694_010 Hb_077694_010 Hb_000069_530--Hb_077694_010 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_009252_090--Hb_000069_530 Hb_009252_090--Hb_003060_150 Hb_004551_010 Hb_004551_010 Hb_009252_090--Hb_004551_010 Hb_009252_090--Hb_031266_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57629 158.002 208.545 97.7206 0.617122 0.230319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82916 2.31196 1.10956 1.93893 4.89318

CAGE analysis