Hb_000170_080

Information

Type -
Description -
Location Contig170: 95181-95636
Sequence    

Annotation

kegg
ID rcu:RCOM_0561520
description calcium binding protein/cast, putative
nr
ID XP_012078334.1
description PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
swissprot
ID Q9LPK5
description Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2
trembl
ID A0A067K9G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12163 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_080 0.0 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
2 Hb_000215_150 0.169289 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
3 Hb_007919_070 0.1789175765 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
4 Hb_001007_090 0.1845081316 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
5 Hb_003935_050 0.1846338848 - - protein with unknown function [Ricinus communis]
6 Hb_000140_250 0.1903704676 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
7 Hb_000000_130 0.1905745124 - - Disease resistance-responsive family protein [Theobroma cacao]
8 Hb_000388_040 0.1925733779 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
9 Hb_155896_010 0.1937071423 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
10 Hb_001143_200 0.1949306862 transcription factor TF Family: NAC NAC domain protein [Glycine max]
11 Hb_000280_100 0.1980035082 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
12 Hb_116420_050 0.1987096417 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
13 Hb_002435_010 0.19949935 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
14 Hb_000042_020 0.2003887643 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_000251_170 0.2010827614 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
16 Hb_000866_430 0.2045352181 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
17 Hb_014700_020 0.2051637417 - - tryptophan synthase beta chain, putative [Ricinus communis]
18 Hb_008878_010 0.2061040228 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
19 Hb_027065_010 0.2067952269 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
20 Hb_127372_010 0.207357462 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]

Gene co-expression network

sample Hb_000170_080 Hb_000170_080 Hb_000215_150 Hb_000215_150 Hb_000170_080--Hb_000215_150 Hb_007919_070 Hb_007919_070 Hb_000170_080--Hb_007919_070 Hb_001007_090 Hb_001007_090 Hb_000170_080--Hb_001007_090 Hb_003935_050 Hb_003935_050 Hb_000170_080--Hb_003935_050 Hb_000140_250 Hb_000140_250 Hb_000170_080--Hb_000140_250 Hb_000000_130 Hb_000000_130 Hb_000170_080--Hb_000000_130 Hb_000388_040 Hb_000388_040 Hb_000215_150--Hb_000388_040 Hb_000115_190 Hb_000115_190 Hb_000215_150--Hb_000115_190 Hb_001143_200 Hb_001143_200 Hb_000215_150--Hb_001143_200 Hb_008878_010 Hb_008878_010 Hb_000215_150--Hb_008878_010 Hb_003767_030 Hb_003767_030 Hb_000215_150--Hb_003767_030 Hb_000215_150--Hb_007919_070 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_001007_090--Hb_008878_010 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_000134_260 Hb_000134_260 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_001007_090--Hb_000866_430 Hb_001007_090--Hb_116420_050 Hb_003935_050--Hb_001143_200 Hb_005695_070 Hb_005695_070 Hb_003935_050--Hb_005695_070 Hb_163140_010 Hb_163140_010 Hb_003935_050--Hb_163140_010 Hb_000280_100 Hb_000280_100 Hb_003935_050--Hb_000280_100 Hb_028187_010 Hb_028187_010 Hb_003935_050--Hb_028187_010 Hb_000035_140 Hb_000035_140 Hb_000140_250--Hb_000035_140 Hb_000140_250--Hb_000349_170 Hb_115962_010 Hb_115962_010 Hb_000140_250--Hb_115962_010 Hb_000140_250--Hb_007919_070 Hb_000140_250--Hb_005695_070 Hb_000140_250--Hb_000134_260 Hb_000000_130--Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_000000_130--Hb_027065_010 Hb_002999_150 Hb_002999_150 Hb_000000_130--Hb_002999_150 Hb_003787_050 Hb_003787_050 Hb_000000_130--Hb_003787_050 Hb_107174_010 Hb_107174_010 Hb_000000_130--Hb_107174_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171844 1.99222 7.79718 0.984611 0 0.350616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.20444 0.103445 0.225208

CAGE analysis