Hb_000140_250

Information

Type -
Description -
Location Contig140: 248408-249234
Sequence    

Annotation

kegg
ID rcu:RCOM_1616730
description Late embryogenesis abundant protein Lea14-A, putative
nr
ID XP_002511927.1
description Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
swissprot
ID P46519
description Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1
trembl
ID B9RDY8
description Late embryogenesis abundant protein Lea14-A, putative OS=Ricinus communis GN=RCOM_1616730 PE=4 SV=1
Gene Ontology
ID GO:0005829
description late embryogenesis abundant protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10842: 248406-249388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_250 0.0 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
2 Hb_000035_140 0.1260895283 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
3 Hb_000349_170 0.1331185288 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
4 Hb_115962_010 0.1399870246 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_007919_070 0.1412981919 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
6 Hb_005695_070 0.1470538913 - - Cysteine-rich RLK 29 [Theobroma cacao]
7 Hb_000134_260 0.1501331025 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_005599_020 0.1522757925 - - Protein MLO, putative [Ricinus communis]
9 Hb_149985_030 0.1576282204 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
10 Hb_001913_070 0.1594852508 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
11 Hb_004551_010 0.1613301541 - - tryptophan synthase beta chain, putative [Ricinus communis]
12 Hb_000251_170 0.16311643 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
13 Hb_001001_010 0.163878198 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_000866_430 0.1656243103 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
15 Hb_014700_020 0.1661438862 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_000429_240 0.1685768398 - - PREDICTED: uncharacterized protein LOC105645185 isoform X1 [Jatropha curcas]
17 Hb_001025_140 0.1699037595 - - hypothetical protein POPTR_0015s09180g [Populus trichocarpa]
18 Hb_009421_090 0.1711192356 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
19 Hb_000049_030 0.1744252931 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001926_020 0.1766716631 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000140_250 Hb_000140_250 Hb_000035_140 Hb_000035_140 Hb_000140_250--Hb_000035_140 Hb_000349_170 Hb_000349_170 Hb_000140_250--Hb_000349_170 Hb_115962_010 Hb_115962_010 Hb_000140_250--Hb_115962_010 Hb_007919_070 Hb_007919_070 Hb_000140_250--Hb_007919_070 Hb_005695_070 Hb_005695_070 Hb_000140_250--Hb_005695_070 Hb_000134_260 Hb_000134_260 Hb_000140_250--Hb_000134_260 Hb_000035_140--Hb_115962_010 Hb_001660_080 Hb_001660_080 Hb_000035_140--Hb_001660_080 Hb_189208_060 Hb_189208_060 Hb_000035_140--Hb_189208_060 Hb_001160_050 Hb_001160_050 Hb_000035_140--Hb_001160_050 Hb_004551_010 Hb_004551_010 Hb_000035_140--Hb_004551_010 Hb_012496_020 Hb_012496_020 Hb_000035_140--Hb_012496_020 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040 Hb_000438_200 Hb_000438_200 Hb_115962_010--Hb_000438_200 Hb_000049_030 Hb_000049_030 Hb_115962_010--Hb_000049_030 Hb_115962_010--Hb_012496_020 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_001025_140 Hb_001025_140 Hb_115962_010--Hb_001025_140 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_000866_430 Hb_000866_430 Hb_007919_070--Hb_000866_430 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_116420_050 Hb_116420_050 Hb_007919_070--Hb_116420_050 Hb_007919_070--Hb_000349_170 Hb_005695_070--Hb_149985_030 Hb_001001_010 Hb_001001_010 Hb_005695_070--Hb_001001_010 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_005695_070--Hb_022406_010 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000134_260--Hb_000035_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.428478 8.18587 25.0849 3.8861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.434572 0.27916 3.82642

CAGE analysis