Hb_003787_050

Information

Type -
Description -
Location Contig3787: 28925-31166
Sequence    

Annotation

kegg
ID rcu:RCOM_1045960
description hypothetical protein
nr
ID XP_002514065.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84M97
description Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=1 SV=1
trembl
ID B9RK21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003787_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000540_210 0.1712643462 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027065_010 0.1791605113 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_002435_010 0.1928082188 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
5 Hb_116420_050 0.1980680291 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
6 Hb_000000_130 0.198090281 - - Disease resistance-responsive family protein [Theobroma cacao]
7 Hb_000340_070 0.1994672715 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
8 Hb_004586_310 0.2096773452 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003207_220 0.2099173685 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
10 Hb_052764_120 0.2100728562 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
11 Hb_127372_010 0.2139595358 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
12 Hb_000280_100 0.2150805652 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
13 Hb_010578_020 0.2154308021 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000069_250 0.2162191889 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
15 Hb_000042_020 0.216650774 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_002534_040 0.2215620456 - - Calmodulin, putative [Ricinus communis]
17 Hb_002999_150 0.2233592874 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
18 Hb_000604_080 0.2241395091 - - Fgenesh protein [Medicago truncatula]
19 Hb_003428_040 0.2265035935 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
20 Hb_002267_010 0.2272941989 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]

Gene co-expression network

sample Hb_003787_050 Hb_003787_050 Hb_000540_210 Hb_000540_210 Hb_003787_050--Hb_000540_210 Hb_027065_010 Hb_027065_010 Hb_003787_050--Hb_027065_010 Hb_002435_010 Hb_002435_010 Hb_003787_050--Hb_002435_010 Hb_116420_050 Hb_116420_050 Hb_003787_050--Hb_116420_050 Hb_000000_130 Hb_000000_130 Hb_003787_050--Hb_000000_130 Hb_000340_070 Hb_000340_070 Hb_003787_050--Hb_000340_070 Hb_008115_030 Hb_008115_030 Hb_000540_210--Hb_008115_030 Hb_000365_110 Hb_000365_110 Hb_000540_210--Hb_000365_110 Hb_003428_040 Hb_003428_040 Hb_000540_210--Hb_003428_040 Hb_000574_270 Hb_000574_270 Hb_000540_210--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_000540_210--Hb_000483_050 Hb_027065_010--Hb_116420_050 Hb_127372_010 Hb_127372_010 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_003207_220 Hb_003207_220 Hb_027065_010--Hb_003207_220 Hb_000866_430 Hb_000866_430 Hb_027065_010--Hb_000866_430 Hb_000042_020 Hb_000042_020 Hb_027065_010--Hb_000042_020 Hb_052764_120 Hb_052764_120 Hb_002435_010--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002435_010--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_002435_010--Hb_010578_020 Hb_002435_010--Hb_003207_220 Hb_048141_060 Hb_048141_060 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_116420_050--Hb_127372_010 Hb_116420_050--Hb_003207_220 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_116420_050--Hb_000866_430 Hb_000000_130--Hb_116420_050 Hb_000000_130--Hb_027065_010 Hb_000170_080 Hb_000170_080 Hb_000000_130--Hb_000170_080 Hb_002999_150 Hb_002999_150 Hb_000000_130--Hb_002999_150 Hb_107174_010 Hb_107174_010 Hb_000000_130--Hb_107174_010 Hb_002534_040 Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_000604_080 Hb_000604_080 Hb_000340_070--Hb_000604_080 Hb_000340_070--Hb_002435_010 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000340_070--Hb_000668_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0746979 0.310469 0.016911 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0256725 0 0 0.00804555 0

CAGE analysis