Hb_003799_020

Information

Type -
Description -
Location Contig3799: 39436-44129
Sequence    

Annotation

kegg
ID vvi:104879858
description uncharacterized LOC104879858
nr
ID CAN66129.1
description hypothetical protein VITISV_003261 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BXI2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003261 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003799_020 0.0 - - hypothetical protein VITISV_003261 [Vitis vinifera]
2 Hb_003747_110 0.2210951022 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
3 Hb_000302_210 0.224494025 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001221_280 0.2538374908 - - -
5 Hb_001008_140 0.2624529367 - - -
6 Hb_098785_010 0.2673264747 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_006788_080 0.2908422568 - - ammonium transporter, putative [Ricinus communis]
8 Hb_043623_020 0.2935763526 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
9 Hb_000985_070 0.294255983 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
10 Hb_000042_370 0.3037027814 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000010_100 0.3039404373 - - hypothetical protein POPTR_0016s14440g [Populus trichocarpa]
12 Hb_001143_260 0.3081096364 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
13 Hb_000579_050 0.3129467155 - - PREDICTED: peroxidase 9 [Jatropha curcas]
14 Hb_014068_020 0.3453820332 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
15 Hb_003659_020 0.3456964322 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_008035_050 0.3465504048 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_000125_220 0.3470741159 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
18 Hb_139691_010 0.3483876486 - - -
19 Hb_000856_160 0.3503366619 - - -
20 Hb_000392_290 0.3610690862 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003799_020 Hb_003799_020 Hb_003747_110 Hb_003747_110 Hb_003799_020--Hb_003747_110 Hb_000302_210 Hb_000302_210 Hb_003799_020--Hb_000302_210 Hb_001221_280 Hb_001221_280 Hb_003799_020--Hb_001221_280 Hb_001008_140 Hb_001008_140 Hb_003799_020--Hb_001008_140 Hb_098785_010 Hb_098785_010 Hb_003799_020--Hb_098785_010 Hb_006788_080 Hb_006788_080 Hb_003799_020--Hb_006788_080 Hb_003747_110--Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_003747_110--Hb_000042_370 Hb_000220_140 Hb_000220_140 Hb_003747_110--Hb_000220_140 Hb_003747_110--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_003747_110--Hb_000985_070 Hb_000302_210--Hb_000985_070 Hb_012754_020 Hb_012754_020 Hb_000302_210--Hb_012754_020 Hb_000302_210--Hb_098785_010 Hb_000125_220 Hb_000125_220 Hb_000302_210--Hb_000125_220 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_043623_020 Hb_043623_020 Hb_001221_280--Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_001221_280--Hb_001143_260 Hb_001221_280--Hb_098785_010 Hb_006569_070 Hb_006569_070 Hb_001221_280--Hb_006569_070 Hb_000856_160 Hb_000856_160 Hb_001221_280--Hb_000856_160 Hb_007547_020 Hb_007547_020 Hb_001008_140--Hb_007547_020 Hb_001008_140--Hb_001221_280 Hb_001008_140--Hb_000856_160 Hb_003659_020 Hb_003659_020 Hb_001008_140--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_001008_140--Hb_008035_050 Hb_098785_010--Hb_000125_220 Hb_098785_010--Hb_006569_070 Hb_098785_010--Hb_000985_070 Hb_006788_080--Hb_000042_370 Hb_001060_080 Hb_001060_080 Hb_006788_080--Hb_001060_080 Hb_006907_090 Hb_006907_090 Hb_006788_080--Hb_006907_090 Hb_000061_280 Hb_000061_280 Hb_006788_080--Hb_000061_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00783913 0.0215232 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0322434 0.00675493 0

CAGE analysis