Hb_001060_080

Information

Type -
Description -
Location Contig1060: 70700-75059
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID XP_009768808.1
description PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID F6GZX4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001060_080 0.0 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
2 Hb_006907_090 0.257232971 - - -
3 Hb_006788_080 0.2777720536 - - ammonium transporter, putative [Ricinus communis]
4 Hb_007403_080 0.3107843555 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001545_190 0.3124162537 - - hypothetical protein VITISV_012031 [Vitis vinifera]
6 Hb_000061_280 0.3252371715 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
7 Hb_117807_030 0.3327810406 - - Protein MCM10 [Gossypium arboreum]
8 Hb_003747_110 0.3433966443 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
9 Hb_074108_010 0.3585702413 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_000191_010 0.3616052127 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_015475_010 0.3626245991 - - hypothetical protein VITISV_034342 [Vitis vinifera]
12 Hb_001235_090 0.3634855029 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
13 Hb_003001_020 0.3692986619 - - hypothetical protein JCGZ_17508 [Jatropha curcas]
14 Hb_000042_370 0.3754942257 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000220_140 0.3795717351 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
16 Hb_150851_010 0.3805788988 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000236_330 0.3828378081 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_011671_060 0.3855330223 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
19 Hb_002035_070 0.3856812997 - - hypothetical protein CICLE_v10033569mg [Citrus clementina]
20 Hb_000890_180 0.3870437336 - - glutaredoxin, grx, putative [Ricinus communis]

Gene co-expression network

sample Hb_001060_080 Hb_001060_080 Hb_006907_090 Hb_006907_090 Hb_001060_080--Hb_006907_090 Hb_006788_080 Hb_006788_080 Hb_001060_080--Hb_006788_080 Hb_007403_080 Hb_007403_080 Hb_001060_080--Hb_007403_080 Hb_001545_190 Hb_001545_190 Hb_001060_080--Hb_001545_190 Hb_000061_280 Hb_000061_280 Hb_001060_080--Hb_000061_280 Hb_117807_030 Hb_117807_030 Hb_001060_080--Hb_117807_030 Hb_015475_010 Hb_015475_010 Hb_006907_090--Hb_015475_010 Hb_152362_010 Hb_152362_010 Hb_006907_090--Hb_152362_010 Hb_000120_690 Hb_000120_690 Hb_006907_090--Hb_000120_690 Hb_001235_090 Hb_001235_090 Hb_006907_090--Hb_001235_090 Hb_006907_090--Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_006788_080--Hb_000042_370 Hb_003747_110 Hb_003747_110 Hb_006788_080--Hb_003747_110 Hb_003799_020 Hb_003799_020 Hb_006788_080--Hb_003799_020 Hb_006788_080--Hb_000061_280 Hb_000062_010 Hb_000062_010 Hb_007403_080--Hb_000062_010 Hb_171537_010 Hb_171537_010 Hb_007403_080--Hb_171537_010 Hb_026198_030 Hb_026198_030 Hb_007403_080--Hb_026198_030 Hb_182750_010 Hb_182750_010 Hb_007403_080--Hb_182750_010 Hb_002876_160 Hb_002876_160 Hb_007403_080--Hb_002876_160 Hb_001545_190--Hb_000061_280 Hb_150851_010 Hb_150851_010 Hb_001545_190--Hb_150851_010 Hb_008835_010 Hb_008835_010 Hb_001545_190--Hb_008835_010 Hb_012399_010 Hb_012399_010 Hb_001545_190--Hb_012399_010 Hb_021419_050 Hb_021419_050 Hb_001545_190--Hb_021419_050 Hb_003025_070 Hb_003025_070 Hb_001545_190--Hb_003025_070 Hb_000061_280--Hb_150851_010 Hb_000061_280--Hb_008835_010 Hb_000061_280--Hb_012399_010 Hb_000061_280--Hb_003025_070 Hb_000061_280--Hb_021419_050 Hb_176472_010 Hb_176472_010 Hb_117807_030--Hb_176472_010 Hb_117807_030--Hb_001235_090 Hb_034905_010 Hb_034905_010 Hb_117807_030--Hb_034905_010 Hb_000191_010 Hb_000191_010 Hb_117807_030--Hb_000191_010 Hb_000545_160 Hb_000545_160 Hb_117807_030--Hb_000545_160 Hb_117807_030--Hb_000120_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0361043 0.00772498 0.00803407 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0352568 0 0

CAGE analysis