Hb_000191_010

Information

Type -
Description -
Location Contig191: 33866-37422
Sequence    

Annotation

kegg
ID rcu:RCOM_1247050
description WD-repeat protein, putative
nr
ID XP_002527721.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9XSC3
description WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1
trembl
ID B9SP02
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1247050 PE=4 SV=1
Gene Ontology
ID GO:0005737
description wd repeat-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000191_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000398_050 0.1995755277 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
3 Hb_000545_160 0.2683417027 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
4 Hb_026198_030 0.2735264669 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
5 Hb_117807_030 0.2745634119 - - Protein MCM10 [Gossypium arboreum]
6 Hb_000554_030 0.2847875093 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_000028_500 0.3006752606 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001235_090 0.3020233507 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
9 Hb_023344_070 0.3113425474 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_139139_010 0.3157935379 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_000856_050 0.3205090788 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
12 Hb_015970_010 0.3223823239 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_000980_070 0.3249741247 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
14 Hb_001894_180 0.3258271351 - - galactinol synthase [Manihot esculenta]
15 Hb_000256_060 0.3267231061 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
16 Hb_176472_010 0.3287638144 - - BnaC01g33060D [Brassica napus]
17 Hb_005539_260 0.3315601226 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
18 Hb_003055_170 0.3330724491 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
19 Hb_005288_030 0.3377996606 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
20 Hb_002026_160 0.3443569304 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]

Gene co-expression network

sample Hb_000191_010 Hb_000191_010 Hb_000398_050 Hb_000398_050 Hb_000191_010--Hb_000398_050 Hb_000545_160 Hb_000545_160 Hb_000191_010--Hb_000545_160 Hb_026198_030 Hb_026198_030 Hb_000191_010--Hb_026198_030 Hb_117807_030 Hb_117807_030 Hb_000191_010--Hb_117807_030 Hb_000554_030 Hb_000554_030 Hb_000191_010--Hb_000554_030 Hb_000028_500 Hb_000028_500 Hb_000191_010--Hb_000028_500 Hb_000398_050--Hb_000028_500 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000398_050--Hb_000554_030 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070 Hb_001235_090 Hb_001235_090 Hb_000545_160--Hb_001235_090 Hb_176472_010 Hb_176472_010 Hb_000545_160--Hb_176472_010 Hb_000545_160--Hb_117807_030 Hb_000120_690 Hb_000120_690 Hb_000545_160--Hb_000120_690 Hb_000545_160--Hb_000398_050 Hb_026198_030--Hb_000028_500 Hb_026198_030--Hb_023344_070 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_002876_160 Hb_002876_160 Hb_026198_030--Hb_002876_160 Hb_117807_030--Hb_176472_010 Hb_117807_030--Hb_001235_090 Hb_034905_010 Hb_034905_010 Hb_117807_030--Hb_034905_010 Hb_117807_030--Hb_000120_690 Hb_005539_260 Hb_005539_260 Hb_000554_030--Hb_005539_260 Hb_007975_050 Hb_007975_050 Hb_000554_030--Hb_007975_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_003159_150 Hb_003159_150 Hb_000028_500--Hb_003159_150 Hb_002893_030 Hb_002893_030 Hb_000028_500--Hb_002893_030 Hb_002000_090 Hb_002000_090 Hb_000028_500--Hb_002000_090 Hb_000028_500--Hb_005539_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0980218 0.00512196 0.0991926 0 0.00644732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.094365 0.0293996 0

CAGE analysis