Hb_007975_050

Information

Type -
Description -
Location Contig7975: 85105-85482
Sequence    

Annotation

kegg
ID rcu:RCOM_0904870
description hypothetical protein
nr
ID XP_012091351.1
description PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RXL9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007975_050 0.0 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
2 Hb_002027_030 0.2131706681 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004162_060 0.2235696904 - - unnamed protein product [Vitis vinifera]
4 Hb_000086_290 0.2319665678 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
5 Hb_005539_260 0.2376025011 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
6 Hb_000554_030 0.2379150128 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_015778_030 0.2400080337 - - PREDICTED: probable myosin light chain kinase DDB_G0279831 [Jatropha curcas]
8 Hb_023827_020 0.2415886832 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
9 Hb_001170_010 0.2464883514 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_001898_140 0.2465929188 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
11 Hb_183086_070 0.2532072314 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
12 Hb_002527_050 0.2589891442 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
13 Hb_003050_030 0.2595297785 - - Calcyclin-binding protein, putative [Ricinus communis]
14 Hb_012565_040 0.2603366973 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
15 Hb_000059_300 0.264106992 - - caspase, putative [Ricinus communis]
16 Hb_000057_080 0.2655959831 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
17 Hb_005813_010 0.2657437519 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_006922_090 0.2668236696 - - PREDICTED: interaptin [Jatropha curcas]
19 Hb_001123_240 0.2679430607 - - JAZ10 [Hevea brasiliensis]
20 Hb_002170_020 0.269163855 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_007975_050 Hb_007975_050 Hb_002027_030 Hb_002027_030 Hb_007975_050--Hb_002027_030 Hb_004162_060 Hb_004162_060 Hb_007975_050--Hb_004162_060 Hb_000086_290 Hb_000086_290 Hb_007975_050--Hb_000086_290 Hb_005539_260 Hb_005539_260 Hb_007975_050--Hb_005539_260 Hb_000554_030 Hb_000554_030 Hb_007975_050--Hb_000554_030 Hb_015778_030 Hb_015778_030 Hb_007975_050--Hb_015778_030 Hb_168319_010 Hb_168319_010 Hb_002027_030--Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_002027_030--Hb_012340_060 Hb_000123_220 Hb_000123_220 Hb_002027_030--Hb_000123_220 Hb_025708_010 Hb_025708_010 Hb_002027_030--Hb_025708_010 Hb_002027_030--Hb_005539_260 Hb_001817_100 Hb_001817_100 Hb_002027_030--Hb_001817_100 Hb_069355_010 Hb_069355_010 Hb_004162_060--Hb_069355_010 Hb_001481_130 Hb_001481_130 Hb_004162_060--Hb_001481_130 Hb_001898_140 Hb_001898_140 Hb_004162_060--Hb_001898_140 Hb_003878_050 Hb_003878_050 Hb_004162_060--Hb_003878_050 Hb_126757_010 Hb_126757_010 Hb_004162_060--Hb_126757_010 Hb_000210_100 Hb_000210_100 Hb_004162_060--Hb_000210_100 Hb_001902_200 Hb_001902_200 Hb_000086_290--Hb_001902_200 Hb_000086_290--Hb_003878_050 Hb_000011_310 Hb_000011_310 Hb_000086_290--Hb_000011_310 Hb_048384_010 Hb_048384_010 Hb_000086_290--Hb_048384_010 Hb_000260_280 Hb_000260_280 Hb_000086_290--Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000086_290--Hb_032972_010 Hb_000094_120 Hb_000094_120 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_005539_260--Hb_000554_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080 Hb_000398_050 Hb_000398_050 Hb_000554_030--Hb_000398_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_023827_020 Hb_023827_020 Hb_015778_030--Hb_023827_020 Hb_000849_060 Hb_000849_060 Hb_015778_030--Hb_000849_060 Hb_000336_230 Hb_000336_230 Hb_015778_030--Hb_000336_230 Hb_006922_090 Hb_006922_090 Hb_015778_030--Hb_006922_090 Hb_018117_020 Hb_018117_020 Hb_015778_030--Hb_018117_020 Hb_000381_110 Hb_000381_110 Hb_015778_030--Hb_000381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.20189 1.29111 7.48839 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668137 1.39966 4.39767 4.47775 0.90402

CAGE analysis