Hb_048384_010

Information

Type -
Description -
Location Contig48384: 1-534
Sequence    

Annotation

kegg
ID csv:101214087
description probable receptor-like protein kinase At2g42960-like
nr
ID XP_004145735.1
description PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID A0A0A0KEI6
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G139760 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at2g42960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048384_010 0.0 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
2 Hb_000086_290 0.1898696337 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
3 Hb_001989_100 0.2004570956 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
4 Hb_032143_020 0.2010484046 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
5 Hb_002900_180 0.2069988867 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
6 Hb_001902_200 0.2114812233 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
7 Hb_010883_180 0.2117473366 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
8 Hb_009079_040 0.2130202994 - - BnaA02g30070D [Brassica napus]
9 Hb_001148_100 0.2155046563 - - -
10 Hb_005529_020 0.2157394985 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
11 Hb_004125_070 0.2200231438 - - Glycolipid transfer protein, putative [Ricinus communis]
12 Hb_000450_170 0.2211181659 - - conserved hypothetical protein [Ricinus communis]
13 Hb_032972_010 0.2218588916 - - Glycolipid transfer protein, putative [Ricinus communis]
14 Hb_006788_040 0.2249958956 - - calmodulin, putative [Ricinus communis]
15 Hb_014720_100 0.2254855745 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
16 Hb_002602_030 0.2302339094 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
17 Hb_004147_070 0.2310537823 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
18 Hb_001366_170 0.2329823253 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
19 Hb_000754_070 0.233080595 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000806_130 0.2339132784 - - Adenosine kinase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_048384_010 Hb_048384_010 Hb_000086_290 Hb_000086_290 Hb_048384_010--Hb_000086_290 Hb_001989_100 Hb_001989_100 Hb_048384_010--Hb_001989_100 Hb_032143_020 Hb_032143_020 Hb_048384_010--Hb_032143_020 Hb_002900_180 Hb_002900_180 Hb_048384_010--Hb_002900_180 Hb_001902_200 Hb_001902_200 Hb_048384_010--Hb_001902_200 Hb_010883_180 Hb_010883_180 Hb_048384_010--Hb_010883_180 Hb_000086_290--Hb_001902_200 Hb_003878_050 Hb_003878_050 Hb_000086_290--Hb_003878_050 Hb_000011_310 Hb_000011_310 Hb_000086_290--Hb_000011_310 Hb_000260_280 Hb_000260_280 Hb_000086_290--Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000086_290--Hb_032972_010 Hb_000300_410 Hb_000300_410 Hb_001989_100--Hb_000300_410 Hb_012707_010 Hb_012707_010 Hb_001989_100--Hb_012707_010 Hb_000950_030 Hb_000950_030 Hb_001989_100--Hb_000950_030 Hb_020805_140 Hb_020805_140 Hb_001989_100--Hb_020805_140 Hb_000496_110 Hb_000496_110 Hb_001989_100--Hb_000496_110 Hb_005976_010 Hb_005976_010 Hb_001989_100--Hb_005976_010 Hb_000671_130 Hb_000671_130 Hb_032143_020--Hb_000671_130 Hb_003207_150 Hb_003207_150 Hb_032143_020--Hb_003207_150 Hb_001369_630 Hb_001369_630 Hb_032143_020--Hb_001369_630 Hb_007632_100 Hb_007632_100 Hb_032143_020--Hb_007632_100 Hb_122636_010 Hb_122636_010 Hb_032143_020--Hb_122636_010 Hb_000696_070 Hb_000696_070 Hb_032143_020--Hb_000696_070 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_001366_170 Hb_001366_170 Hb_001902_200--Hb_001366_170 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001902_200--Hb_001369_630 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154838 0.32149 3.24016 20.067 0.758119 0.146803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.73619 2.60912 2.4821 3.36083 1.79739

CAGE analysis