Hb_000300_410

Information

Type -
Description -
Location Contig300: 363840-365447
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05860g
description POPTRDRAFT_571247; hypothetical protein
nr
ID XP_002319711.2
description hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
swissprot
ID Q8NFD2
description Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1
trembl
ID B9I616
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05860g PE=4 SV=2
Gene Ontology
ID GO:0016301
description ankyrin repeat and protein kinase domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31587: 364887-365153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_410 0.0 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
2 Hb_001989_100 0.1457248099 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
3 Hb_002157_270 0.1490611231 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_012707_010 0.1603002729 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
5 Hb_015675_030 0.1606995312 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
6 Hb_000950_030 0.1702336576 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
7 Hb_011310_040 0.1729193728 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
8 Hb_000496_110 0.1732411256 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
9 Hb_069355_010 0.1757165295 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
10 Hb_147745_010 0.1813207264 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
11 Hb_002596_080 0.1854297574 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
12 Hb_000107_350 0.1870096439 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
13 Hb_008699_030 0.1873768715 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
14 Hb_020805_140 0.1893589401 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
15 Hb_000077_360 0.193112582 - - sugar transporter, putative [Ricinus communis]
16 Hb_001195_070 0.1943415483 - - PREDICTED: protein RER1B-like [Jatropha curcas]
17 Hb_004055_020 0.1944169199 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
18 Hb_005348_110 0.1960727294 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
19 Hb_000106_030 0.1960853682 - - amino acid transporter, putative [Ricinus communis]
20 Hb_001033_070 0.1966361127 - - seryl-tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000300_410 Hb_000300_410 Hb_001989_100 Hb_001989_100 Hb_000300_410--Hb_001989_100 Hb_002157_270 Hb_002157_270 Hb_000300_410--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000300_410--Hb_012707_010 Hb_015675_030 Hb_015675_030 Hb_000300_410--Hb_015675_030 Hb_000950_030 Hb_000950_030 Hb_000300_410--Hb_000950_030 Hb_011310_040 Hb_011310_040 Hb_000300_410--Hb_011310_040 Hb_001989_100--Hb_012707_010 Hb_001989_100--Hb_000950_030 Hb_020805_140 Hb_020805_140 Hb_001989_100--Hb_020805_140 Hb_000496_110 Hb_000496_110 Hb_001989_100--Hb_000496_110 Hb_005976_010 Hb_005976_010 Hb_001989_100--Hb_005976_010 Hb_002157_270--Hb_011310_040 Hb_002129_020 Hb_002129_020 Hb_002157_270--Hb_002129_020 Hb_002157_270--Hb_000950_030 Hb_002596_080 Hb_002596_080 Hb_002157_270--Hb_002596_080 Hb_001493_060 Hb_001493_060 Hb_002157_270--Hb_001493_060 Hb_002164_020 Hb_002164_020 Hb_002157_270--Hb_002164_020 Hb_012707_010--Hb_000950_030 Hb_000696_070 Hb_000696_070 Hb_012707_010--Hb_000696_070 Hb_001486_350 Hb_001486_350 Hb_012707_010--Hb_001486_350 Hb_000806_130 Hb_000806_130 Hb_012707_010--Hb_000806_130 Hb_012707_010--Hb_002157_270 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_001142_010 Hb_001142_010 Hb_015675_030--Hb_001142_010 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_000381_010 Hb_000381_010 Hb_015675_030--Hb_000381_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000950_030--Hb_000806_130 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.662146 0.287262 0.597395 8.50424 0.216827 0.524162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.692126 1.27058 1.83768 0.886728 5.28347

CAGE analysis