Hb_004162_060

Information

Type -
Description -
Location Contig4162: 38099-70549
Sequence    

Annotation

kegg
ID rcu:RCOM_0476300
description Lysosomal Pro-X carboxypeptidase, putative (EC:3.4.16.2)
nr
ID CBI17109.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q7TMR0
description Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=2 SV=2
trembl
ID F6GW68
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01010 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41166: 38240-39708 , PASA_asmbl_41167: 40773-41134 , PASA_asmbl_41168: 50810-51244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_069355_010 0.184122838 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
3 Hb_001481_130 0.1842282609 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001898_140 0.1871809362 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
5 Hb_003878_050 0.1930135647 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
6 Hb_126757_010 0.2003715794 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000210_100 0.2017809128 - - pepsin A, putative [Ricinus communis]
8 Hb_000260_280 0.2018871469 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_000086_290 0.2039779433 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
10 Hb_003894_020 0.2042013397 - - plant sec1, putative [Ricinus communis]
11 Hb_032143_020 0.2077899824 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
12 Hb_001486_190 0.2081565207 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
13 Hb_034299_070 0.2114151842 - - actin binding protein, putative [Ricinus communis]
14 Hb_033413_010 0.2126655472 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_019280_020 0.2166520423 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
16 Hb_025466_020 0.219293881 - - tubulin beta-6 [Brassica oleracea var. italica]
17 Hb_000671_130 0.2208388147 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
18 Hb_026889_040 0.2221476183 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_012362_030 0.2223240566 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
20 Hb_019863_100 0.2224195779 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_004162_060 Hb_004162_060 Hb_069355_010 Hb_069355_010 Hb_004162_060--Hb_069355_010 Hb_001481_130 Hb_001481_130 Hb_004162_060--Hb_001481_130 Hb_001898_140 Hb_001898_140 Hb_004162_060--Hb_001898_140 Hb_003878_050 Hb_003878_050 Hb_004162_060--Hb_003878_050 Hb_126757_010 Hb_126757_010 Hb_004162_060--Hb_126757_010 Hb_000210_100 Hb_000210_100 Hb_004162_060--Hb_000210_100 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_069355_010--Hb_000210_100 Hb_069355_010--Hb_001481_130 Hb_001289_020 Hb_001289_020 Hb_069355_010--Hb_001289_020 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_005348_110 Hb_005348_110 Hb_001481_130--Hb_005348_110 Hb_011139_040 Hb_011139_040 Hb_001481_130--Hb_011139_040 Hb_000849_120 Hb_000849_120 Hb_001481_130--Hb_000849_120 Hb_000465_320 Hb_000465_320 Hb_001481_130--Hb_000465_320 Hb_033413_010 Hb_033413_010 Hb_001481_130--Hb_033413_010 Hb_000975_200 Hb_000975_200 Hb_001898_140--Hb_000975_200 Hb_002097_140 Hb_002097_140 Hb_001898_140--Hb_002097_140 Hb_031089_020 Hb_031089_020 Hb_001898_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_001898_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_001898_140--Hb_005784_060 Hb_122940_010 Hb_122940_010 Hb_001898_140--Hb_122940_010 Hb_026889_040 Hb_026889_040 Hb_003878_050--Hb_026889_040 Hb_000477_040 Hb_000477_040 Hb_003878_050--Hb_000477_040 Hb_000703_280 Hb_000703_280 Hb_003878_050--Hb_000703_280 Hb_004158_020 Hb_004158_020 Hb_003878_050--Hb_004158_020 Hb_001369_630 Hb_001369_630 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_000465_270 Hb_000465_270 Hb_126757_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_126757_010--Hb_004627_030 Hb_007926_050 Hb_007926_050 Hb_126757_010--Hb_007926_050 Hb_001486_190 Hb_001486_190 Hb_126757_010--Hb_001486_190 Hb_000402_130 Hb_000402_130 Hb_126757_010--Hb_000402_130 Hb_075247_010 Hb_075247_010 Hb_126757_010--Hb_075247_010 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_025466_020 Hb_025466_020 Hb_000210_100--Hb_025466_020 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_000210_100--Hb_003878_050 Hb_000210_100--Hb_020805_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133528 0.120235 0.0814741 0.771586 0.0324938 0.0133831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0946582 0.063855 0.307966 0.157827 0.148965

CAGE analysis