Hb_122940_010

Information

Type -
Description -
Location Contig122940: 1628-2275
Sequence    

Annotation

kegg
ID rcu:RCOM_1267040
description isopropylmalate synthase, putative (EC:2.3.3.13)
nr
ID XP_011021916.1
description PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
swissprot
ID Q9C550
description 2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1
trembl
ID B9SX30
description Isopropylmalate synthase, putative OS=Ricinus communis GN=RCOM_1267040 PE=3 SV=1
Gene Ontology
ID GO:0003852
description 2-isopropylmalate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122940_010 0.0 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
2 Hb_001898_140 0.1685550476 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
3 Hb_005813_010 0.1690892868 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_031089_020 0.1725901768 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_000975_200 0.1802655205 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
6 Hb_003387_050 0.1840899788 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
7 Hb_002097_140 0.187172642 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
8 Hb_029510_120 0.1918876899 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
9 Hb_000313_280 0.1951471177 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
10 Hb_005784_060 0.1952315168 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
11 Hb_003470_110 0.1958149964 - - unnamed protein product [Vitis vinifera]
12 Hb_000413_080 0.2001150069 - - -
13 Hb_005408_070 0.2028940404 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
14 Hb_000164_010 0.2038464377 - - small heat-shock protein, putative [Ricinus communis]
15 Hb_005054_020 0.2088545868 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
16 Hb_000028_580 0.2103232537 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
17 Hb_000567_180 0.2103373147 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
18 Hb_000455_070 0.2121701812 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_061222_010 0.2126972019 - - hypothetical protein RCOM_0012650 [Ricinus communis]
20 Hb_004241_110 0.2129788905 - - Minor allergen Alt a, putative [Ricinus communis]

Gene co-expression network

sample Hb_122940_010 Hb_122940_010 Hb_001898_140 Hb_001898_140 Hb_122940_010--Hb_001898_140 Hb_005813_010 Hb_005813_010 Hb_122940_010--Hb_005813_010 Hb_031089_020 Hb_031089_020 Hb_122940_010--Hb_031089_020 Hb_000975_200 Hb_000975_200 Hb_122940_010--Hb_000975_200 Hb_003387_050 Hb_003387_050 Hb_122940_010--Hb_003387_050 Hb_002097_140 Hb_002097_140 Hb_122940_010--Hb_002097_140 Hb_001898_140--Hb_000975_200 Hb_001898_140--Hb_002097_140 Hb_001898_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_001898_140--Hb_080477_080 Hb_005784_060 Hb_005784_060 Hb_001898_140--Hb_005784_060 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_005408_070 Hb_005408_070 Hb_005813_010--Hb_005408_070 Hb_000567_180 Hb_000567_180 Hb_005813_010--Hb_000567_180 Hb_003470_110 Hb_003470_110 Hb_031089_020--Hb_003470_110 Hb_084147_010 Hb_084147_010 Hb_031089_020--Hb_084147_010 Hb_001922_030 Hb_001922_030 Hb_031089_020--Hb_001922_030 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_030565_100 Hb_030565_100 Hb_031089_020--Hb_030565_100 Hb_000975_200--Hb_005784_060 Hb_061222_010 Hb_061222_010 Hb_000975_200--Hb_061222_010 Hb_000003_110 Hb_000003_110 Hb_000975_200--Hb_000003_110 Hb_000069_150 Hb_000069_150 Hb_000975_200--Hb_000069_150 Hb_010883_180 Hb_010883_180 Hb_000975_200--Hb_010883_180 Hb_000002_360 Hb_000002_360 Hb_003387_050--Hb_000002_360 Hb_001221_290 Hb_001221_290 Hb_003387_050--Hb_001221_290 Hb_003387_050--Hb_080477_080 Hb_005054_020 Hb_005054_020 Hb_003387_050--Hb_005054_020 Hb_000866_320 Hb_000866_320 Hb_003387_050--Hb_000866_320 Hb_120117_010 Hb_120117_010 Hb_003387_050--Hb_120117_010 Hb_002097_140--Hb_001922_030 Hb_000811_080 Hb_000811_080 Hb_002097_140--Hb_000811_080 Hb_002097_140--Hb_031089_020 Hb_002097_140--Hb_080477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307041 21.4574 11.926 90.6521 0.157051 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01573 13.5123 2.46572 14.9239 16.9656

CAGE analysis