Hb_000811_080

Information

Type -
Description -
Location Contig811: 96065-96838
Sequence    

Annotation

kegg
ID rcu:RCOM_1197780
description hypothetical protein
nr
ID XP_002533699.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T630
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1197780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59250: 96851-96980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000811_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002097_140 0.1706437557 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
3 Hb_001159_170 0.1897990787 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
4 Hb_004324_030 0.1897991611 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_000186_290 0.1945657843 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
6 Hb_042509_020 0.1979760375 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
7 Hb_009545_030 0.2044905935 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
8 Hb_004958_020 0.2086515261 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
9 Hb_000216_050 0.2133657345 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
10 Hb_172426_050 0.2161622503 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
11 Hb_032225_030 0.2178489844 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
12 Hb_020805_190 0.2185911664 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
13 Hb_001922_030 0.2192148824 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
14 Hb_004346_010 0.2196660674 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005813_010 0.2197591385 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_078081_010 0.2217548623 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
17 Hb_011947_020 0.225575476 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_000110_290 0.2258321857 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002739_040 0.2261473598 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_000189_590 0.2279579344 - - PREDICTED: cysteine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000811_080 Hb_000811_080 Hb_002097_140 Hb_002097_140 Hb_000811_080--Hb_002097_140 Hb_001159_170 Hb_001159_170 Hb_000811_080--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_000811_080--Hb_004324_030 Hb_000186_290 Hb_000186_290 Hb_000811_080--Hb_000186_290 Hb_042509_020 Hb_042509_020 Hb_000811_080--Hb_042509_020 Hb_009545_030 Hb_009545_030 Hb_000811_080--Hb_009545_030 Hb_001898_140 Hb_001898_140 Hb_002097_140--Hb_001898_140 Hb_005813_010 Hb_005813_010 Hb_002097_140--Hb_005813_010 Hb_001922_030 Hb_001922_030 Hb_002097_140--Hb_001922_030 Hb_031089_020 Hb_031089_020 Hb_002097_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_002097_140--Hb_080477_080 Hb_000970_020 Hb_000970_020 Hb_001159_170--Hb_000970_020 Hb_001159_170--Hb_004324_030 Hb_007416_290 Hb_007416_290 Hb_001159_170--Hb_007416_290 Hb_000959_120 Hb_000959_120 Hb_001159_170--Hb_000959_120 Hb_001159_170--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_001159_170--Hb_007134_030 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_042509_020 Hb_026549_050 Hb_026549_050 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_042509_020--Hb_000181_210 Hb_000834_040 Hb_000834_040 Hb_042509_020--Hb_000834_040 Hb_000832_280 Hb_000832_280 Hb_042509_020--Hb_000832_280 Hb_042509_020--Hb_026549_050 Hb_042509_020--Hb_001159_170 Hb_009545_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_009545_030--Hb_008143_040 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030627 0.113336 0.0720249 0.656935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141055 0.0554533 0 0.494379 0.221878

CAGE analysis