Hb_000398_050

Information

Type -
Description -
Location Contig398: 116137-118598
Sequence    

Annotation

kegg
ID pop:POPTR_0003s00860g
description proton-dependent oligopeptide transport family protein
nr
ID XP_012066760.1
description PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
swissprot
ID Q93VV5
description Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana GN=NPF4.3 PE=2 SV=1
trembl
ID A0A067L250
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00309 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_050 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
2 Hb_000028_500 0.1912715175 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000191_010 0.1995755277 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_026198_030 0.2009814343 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
5 Hb_001894_180 0.2210961577 - - galactinol synthase [Manihot esculenta]
6 Hb_000554_030 0.2272657652 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_023344_070 0.2460440667 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_000256_060 0.2582833055 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
9 Hb_005539_260 0.2647872893 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
10 Hb_007975_050 0.2733535651 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
11 Hb_000856_050 0.275913074 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
12 Hb_001268_320 0.2880068945 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
13 Hb_004162_060 0.2891710865 - - unnamed protein product [Vitis vinifera]
14 Hb_001103_020 0.2991943848 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
15 Hb_139139_010 0.3047557447 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
16 Hb_000062_640 0.3051743286 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
17 Hb_000103_190 0.3093733958 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
18 Hb_001123_240 0.3106686597 - - JAZ10 [Hevea brasiliensis]
19 Hb_000016_150 0.3128222765 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
20 Hb_000649_150 0.3138745565 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]

Gene co-expression network

sample Hb_000398_050 Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_026198_030 Hb_026198_030 Hb_000398_050--Hb_026198_030 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030 Hb_023344_070 Hb_023344_070 Hb_000398_050--Hb_023344_070 Hb_000028_500--Hb_026198_030 Hb_003159_150 Hb_003159_150 Hb_000028_500--Hb_003159_150 Hb_002893_030 Hb_002893_030 Hb_000028_500--Hb_002893_030 Hb_002000_090 Hb_002000_090 Hb_000028_500--Hb_002000_090 Hb_005539_260 Hb_005539_260 Hb_000028_500--Hb_005539_260 Hb_000545_160 Hb_000545_160 Hb_000191_010--Hb_000545_160 Hb_000191_010--Hb_026198_030 Hb_117807_030 Hb_117807_030 Hb_000191_010--Hb_117807_030 Hb_000191_010--Hb_000554_030 Hb_000191_010--Hb_000028_500 Hb_026198_030--Hb_023344_070 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_002876_160 Hb_002876_160 Hb_026198_030--Hb_002876_160 Hb_168319_020 Hb_168319_020 Hb_001894_180--Hb_168319_020 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_010377_020 Hb_010377_020 Hb_001894_180--Hb_010377_020 Hb_001329_030 Hb_001329_030 Hb_001894_180--Hb_001329_030 Hb_000554_030--Hb_005539_260 Hb_007975_050 Hb_007975_050 Hb_000554_030--Hb_007975_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_000384_110 Hb_000384_110 Hb_023344_070--Hb_000384_110 Hb_023344_070--Hb_002876_160 Hb_018118_030 Hb_018118_030 Hb_023344_070--Hb_018118_030 Hb_001123_240 Hb_001123_240 Hb_023344_070--Hb_001123_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154366 6.08523 0.334631 10.5995 0.113971 0.0500706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201442 0.362252 6.14145 2.42876 0.427512

CAGE analysis