Hb_000384_110

Information

Type -
Description -
Location Contig384: 152094-153242
Sequence    

Annotation

kegg
ID rcu:RCOM_1329550
description hypothetical protein
nr
ID XP_002521754.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6Y5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003938_160 0.155834188 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
3 Hb_005188_030 0.1584879024 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000931_020 0.159060576 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
5 Hb_018118_030 0.1633319448 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
6 Hb_000984_310 0.1768052129 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
7 Hb_000622_340 0.1820624541 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
8 Hb_007926_050 0.1881379701 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
9 Hb_001357_040 0.1891422373 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_000140_350 0.1908671383 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004450_050 0.1919846978 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
12 Hb_000836_280 0.1924578823 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
13 Hb_005539_310 0.1924796481 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
14 Hb_003688_180 0.1925567992 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
15 Hb_013057_020 0.1937422046 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
16 Hb_063716_090 0.1954586605 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007409_040 0.1969239437 - - actin family protein [Populus trichocarpa]
18 Hb_000991_040 0.197108466 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
19 Hb_001217_040 0.1976791709 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
20 Hb_001486_190 0.1983267686 - - hypothetical protein JCGZ_02702 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_110 Hb_000384_110 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_005188_030 Hb_005188_030 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_018118_030 Hb_018118_030 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_013057_020 Hb_013057_020 Hb_003938_160--Hb_013057_020 Hb_004450_050 Hb_004450_050 Hb_003938_160--Hb_004450_050 Hb_002344_130 Hb_002344_130 Hb_003938_160--Hb_002344_130 Hb_145629_010 Hb_145629_010 Hb_003938_160--Hb_145629_010 Hb_007926_050 Hb_007926_050 Hb_003938_160--Hb_007926_050 Hb_007409_040 Hb_007409_040 Hb_005188_030--Hb_007409_040 Hb_003078_020 Hb_003078_020 Hb_005188_030--Hb_003078_020 Hb_005188_030--Hb_000931_020 Hb_000802_090 Hb_000802_090 Hb_005188_030--Hb_000802_090 Hb_000815_240 Hb_000815_240 Hb_005188_030--Hb_000815_240 Hb_006441_020 Hb_006441_020 Hb_005188_030--Hb_006441_020 Hb_000931_020--Hb_000622_340 Hb_000931_020--Hb_003078_020 Hb_001357_040 Hb_001357_040 Hb_000931_020--Hb_001357_040 Hb_008937_010 Hb_008937_010 Hb_000931_020--Hb_008937_010 Hb_000991_040 Hb_000991_040 Hb_000931_020--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_000931_020--Hb_000260_600 Hb_144096_010 Hb_144096_010 Hb_018118_030--Hb_144096_010 Hb_018118_030--Hb_000931_020 Hb_018118_030--Hb_005188_030 Hb_063716_090 Hb_063716_090 Hb_018118_030--Hb_063716_090 Hb_135757_010 Hb_135757_010 Hb_018118_030--Hb_135757_010 Hb_001486_190 Hb_001486_190 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_012651_010 Hb_012651_010 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000140_350 Hb_000140_350 Hb_000984_310--Hb_000140_350 Hb_000890_030 Hb_000890_030 Hb_000622_340--Hb_000890_030 Hb_000622_340--Hb_000991_040 Hb_012760_030 Hb_012760_030 Hb_000622_340--Hb_012760_030 Hb_000622_340--Hb_008937_010 Hb_010407_060 Hb_010407_060 Hb_000622_340--Hb_010407_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.747763 5.88586 1.99089 10.4304 3.82039 2.15109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79525 2.68976 4.68022 2.84425 0.694089

CAGE analysis