Hb_003938_160

Information

Type -
Description -
Location Contig3938: 153287-161767
Sequence    

Annotation

kegg
ID rcu:RCOM_0463610
description basic helix-loop-helix-containing protein, putative
nr
ID XP_012085338.1
description PREDICTED: transcription factor bHLH155 [Jatropha curcas]
swissprot
ID Q58G01
description Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1
trembl
ID A0A067K423
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17712 PE=4 SV=1
Gene Ontology
ID GO:0046983
description basic helix-loop-helix-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39430: 153034-161736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_160 0.0 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
2 Hb_013057_020 0.1515833467 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
3 Hb_000384_110 0.155834188 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004450_050 0.158796476 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
5 Hb_002344_130 0.162061079 - - PREDICTED: copper transporter 5 [Jatropha curcas]
6 Hb_145629_010 0.1644592382 - - -
7 Hb_007926_050 0.1662457882 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
8 Hb_000066_090 0.1687378038 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
9 Hb_183610_010 0.174698174 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
10 Hb_130613_010 0.1752854818 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
11 Hb_000359_090 0.1759885273 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
12 Hb_000264_360 0.1774108513 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
13 Hb_002781_030 0.1778063078 - - protein binding protein, putative [Ricinus communis]
14 Hb_006441_020 0.1791430061 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
15 Hb_002133_020 0.182455968 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005539_310 0.1834656375 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
17 Hb_005074_030 0.1839476894 - - -
18 Hb_005188_030 0.1860104168 - - amino acid transporter, putative [Ricinus communis]
19 Hb_006643_020 0.1860350772 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
20 Hb_001396_110 0.1863531733 - - DNA primase large subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003938_160 Hb_003938_160 Hb_013057_020 Hb_013057_020 Hb_003938_160--Hb_013057_020 Hb_000384_110 Hb_000384_110 Hb_003938_160--Hb_000384_110 Hb_004450_050 Hb_004450_050 Hb_003938_160--Hb_004450_050 Hb_002344_130 Hb_002344_130 Hb_003938_160--Hb_002344_130 Hb_145629_010 Hb_145629_010 Hb_003938_160--Hb_145629_010 Hb_007926_050 Hb_007926_050 Hb_003938_160--Hb_007926_050 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_006441_020 Hb_006441_020 Hb_013057_020--Hb_006441_020 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_023344_150 Hb_023344_150 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_005188_030 Hb_005188_030 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_018118_030 Hb_018118_030 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_004450_050--Hb_005188_030 Hb_004450_050--Hb_006441_020 Hb_000003_540 Hb_000003_540 Hb_002344_130--Hb_000003_540 Hb_000111_030 Hb_000111_030 Hb_002344_130--Hb_000111_030 Hb_000023_290 Hb_000023_290 Hb_002344_130--Hb_000023_290 Hb_000245_080 Hb_000245_080 Hb_002344_130--Hb_000245_080 Hb_002344_130--Hb_145629_010 Hb_001747_030 Hb_001747_030 Hb_002344_130--Hb_001747_030 Hb_000481_050 Hb_000481_050 Hb_145629_010--Hb_000481_050 Hb_066913_010 Hb_066913_010 Hb_145629_010--Hb_066913_010 Hb_001135_140 Hb_001135_140 Hb_145629_010--Hb_001135_140 Hb_000363_330 Hb_000363_330 Hb_145629_010--Hb_000363_330 Hb_001189_040 Hb_001189_040 Hb_007926_050--Hb_001189_040 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_000384_070 Hb_000384_070 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_002045_070 Hb_002045_070 Hb_007926_050--Hb_002045_070 Hb_033594_080 Hb_033594_080 Hb_007926_050--Hb_033594_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.79262 20.4897 3.7764 39.9671 5.37603 8.6677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5269 14.399 11.8534 11.2604 1.85427

CAGE analysis