Hb_005188_030

Information

Type -
Description -
Location Contig5188: 16362-20934
Sequence    

Annotation

kegg
ID rcu:RCOM_0012320
description amino acid transporter, putative
nr
ID XP_002534057.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q99624
description Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=1 SV=1
trembl
ID B9T738
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0012320 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46618: 16833-20978 , PASA_asmbl_46619: 17855-18513 , PASA_asmbl_46621: 18756-19118 , PASA_asmbl_46622: 17814-17930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005188_030 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_007409_040 0.100974456 - - actin family protein [Populus trichocarpa]
3 Hb_003078_020 0.1080563265 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
4 Hb_000931_020 0.1154342821 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
5 Hb_000802_090 0.120666935 - - ornithine aminotransferase, putative [Ricinus communis]
6 Hb_000815_240 0.122670292 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_006441_020 0.1228337235 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
8 Hb_000205_240 0.1234050946 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_009627_030 0.1255715816 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
10 Hb_006573_210 0.1256728673 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
11 Hb_007850_090 0.1268133275 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
12 Hb_000622_340 0.1271402828 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
13 Hb_003688_180 0.1279443256 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
14 Hb_008937_010 0.1302944186 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
15 Hb_006006_040 0.1305808835 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
16 Hb_003071_020 0.1328248532 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
17 Hb_007017_040 0.1328501132 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
18 Hb_011360_050 0.1338107605 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
19 Hb_001357_040 0.1340740163 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_146051_010 0.1347451443 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_005188_030 Hb_005188_030 Hb_007409_040 Hb_007409_040 Hb_005188_030--Hb_007409_040 Hb_003078_020 Hb_003078_020 Hb_005188_030--Hb_003078_020 Hb_000931_020 Hb_000931_020 Hb_005188_030--Hb_000931_020 Hb_000802_090 Hb_000802_090 Hb_005188_030--Hb_000802_090 Hb_000815_240 Hb_000815_240 Hb_005188_030--Hb_000815_240 Hb_006441_020 Hb_006441_020 Hb_005188_030--Hb_006441_020 Hb_006006_040 Hb_006006_040 Hb_007409_040--Hb_006006_040 Hb_146051_010 Hb_146051_010 Hb_007409_040--Hb_146051_010 Hb_001454_230 Hb_001454_230 Hb_007409_040--Hb_001454_230 Hb_001500_100 Hb_001500_100 Hb_007409_040--Hb_001500_100 Hb_001051_070 Hb_001051_070 Hb_007409_040--Hb_001051_070 Hb_001114_110 Hb_001114_110 Hb_007409_040--Hb_001114_110 Hb_000094_310 Hb_000094_310 Hb_003078_020--Hb_000094_310 Hb_000487_380 Hb_000487_380 Hb_003078_020--Hb_000487_380 Hb_008937_010 Hb_008937_010 Hb_003078_020--Hb_008937_010 Hb_000941_130 Hb_000941_130 Hb_003078_020--Hb_000941_130 Hb_004410_120 Hb_004410_120 Hb_003078_020--Hb_004410_120 Hb_001489_100 Hb_001489_100 Hb_003078_020--Hb_001489_100 Hb_000622_340 Hb_000622_340 Hb_000931_020--Hb_000622_340 Hb_000931_020--Hb_003078_020 Hb_001357_040 Hb_001357_040 Hb_000931_020--Hb_001357_040 Hb_000931_020--Hb_008937_010 Hb_000991_040 Hb_000991_040 Hb_000931_020--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_000931_020--Hb_000260_600 Hb_011360_050 Hb_011360_050 Hb_000802_090--Hb_011360_050 Hb_002232_480 Hb_002232_480 Hb_000802_090--Hb_002232_480 Hb_001329_200 Hb_001329_200 Hb_000802_090--Hb_001329_200 Hb_003398_080 Hb_003398_080 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_007839_020 Hb_007839_020 Hb_000802_090--Hb_007839_020 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000815_240--Hb_000991_040 Hb_005015_080 Hb_005015_080 Hb_000815_240--Hb_005015_080 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_013057_020 Hb_013057_020 Hb_006441_020--Hb_013057_020 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1633 32.0259 10.8173 32.2313 12.724 10.4569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0927 8.92221 18.4324 19.9429 6.0222

CAGE analysis