Hb_063716_090

Information

Type -
Description -
Location Contig63716: 78512-79945
Sequence    

Annotation

kegg
ID rcu:RCOM_0899170
description hypothetical protein
nr
ID XP_002517620.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0899170 PE=4 SV=1
Gene Ontology
ID GO:0005774
description embryo-specific family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51985: 78535-79811
cDNA
(Sanger)
(ID:Location)		 006_J19.ab1: 78539-79811 , 030_I23.ab1: 78539-79804

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063716_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017948_030 0.1201604553 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
3 Hb_003599_030 0.1212555829 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
4 Hb_001675_320 0.1255674533 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
5 Hb_005539_310 0.1277648609 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
6 Hb_000203_270 0.1300278445 - - alpha-xylosidase, putative [Ricinus communis]
7 Hb_004987_020 0.1343444733 - - -
8 Hb_000622_340 0.1379202662 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
9 Hb_083628_010 0.1385108072 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
10 Hb_003849_220 0.1387560399 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
11 Hb_000418_010 0.1395826483 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
12 Hb_000671_030 0.1396620293 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
13 Hb_000671_080 0.1407927921 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
14 Hb_001135_030 0.1451502651 - - PREDICTED: interaptin-like [Jatropha curcas]
15 Hb_000098_050 0.1457174085 - - BnaCnng11900D [Brassica napus]
16 Hb_012180_010 0.1467982522 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
17 Hb_000991_040 0.147495708 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
18 Hb_000705_180 0.1485560162 - - hypothetical protein JCGZ_02923 [Jatropha curcas]
19 Hb_022250_150 0.1492137967 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
20 Hb_001369_780 0.1521975141 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_063716_090 Hb_063716_090 Hb_017948_030 Hb_017948_030 Hb_063716_090--Hb_017948_030 Hb_003599_030 Hb_003599_030 Hb_063716_090--Hb_003599_030 Hb_001675_320 Hb_001675_320 Hb_063716_090--Hb_001675_320 Hb_005539_310 Hb_005539_310 Hb_063716_090--Hb_005539_310 Hb_000203_270 Hb_000203_270 Hb_063716_090--Hb_000203_270 Hb_004987_020 Hb_004987_020 Hb_063716_090--Hb_004987_020 Hb_000671_030 Hb_000671_030 Hb_017948_030--Hb_000671_030 Hb_001691_040 Hb_001691_040 Hb_017948_030--Hb_001691_040 Hb_000912_100 Hb_000912_100 Hb_017948_030--Hb_000912_100 Hb_017948_030--Hb_003599_030 Hb_017948_030--Hb_000203_270 Hb_000622_340 Hb_000622_340 Hb_017948_030--Hb_000622_340 Hb_000705_180 Hb_000705_180 Hb_003599_030--Hb_000705_180 Hb_000671_080 Hb_000671_080 Hb_003599_030--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_009372_020 Hb_009372_020 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160 Hb_001103_090 Hb_001103_090 Hb_001675_320--Hb_001103_090 Hb_001878_060 Hb_001878_060 Hb_001675_320--Hb_001878_060 Hb_000205_280 Hb_000205_280 Hb_001675_320--Hb_000205_280 Hb_003849_220 Hb_003849_220 Hb_001675_320--Hb_003849_220 Hb_028077_020 Hb_028077_020 Hb_001675_320--Hb_028077_020 Hb_001675_320--Hb_003599_030 Hb_001217_040 Hb_001217_040 Hb_005539_310--Hb_001217_040 Hb_005539_310--Hb_004987_020 Hb_118507_010 Hb_118507_010 Hb_005539_310--Hb_118507_010 Hb_000991_040 Hb_000991_040 Hb_005539_310--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_005539_310--Hb_000260_600 Hb_000203_270--Hb_004987_020 Hb_002849_070 Hb_002849_070 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000200_170 Hb_000200_170 Hb_000203_270--Hb_000200_170 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_000203_270--Hb_003599_030 Hb_000679_100 Hb_000679_100 Hb_004987_020--Hb_000679_100 Hb_000085_260 Hb_000085_260 Hb_004987_020--Hb_000085_260 Hb_000395_040 Hb_000395_040 Hb_004987_020--Hb_000395_040 Hb_000890_030 Hb_000890_030 Hb_004987_020--Hb_000890_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7688 74.1093 33.2113 95.2185 37.6032 19.0781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6927 15.2498 10.5244 30.4666 16.4384

CAGE analysis