Hb_017948_030

Information

Type -
Description -
Location Contig17948: 45568-49055
Sequence    

Annotation

kegg
ID rcu:RCOM_0813110
description hypothetical protein
nr
ID XP_012078960.1
description PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14790 PE=4 SV=1
Gene Ontology
ID GO:0005777
description endonuclease or glycosyl hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17348: 45599-49270 , PASA_asmbl_17349: 46245-46677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017948_030 0.0 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
2 Hb_000671_030 0.0958176664 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
3 Hb_001691_040 0.100229169 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
4 Hb_000912_100 0.102065344 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
5 Hb_003599_030 0.1052161815 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
6 Hb_000203_270 0.1061533866 - - alpha-xylosidase, putative [Ricinus communis]
7 Hb_000622_340 0.10887361 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
8 Hb_000991_040 0.1100013288 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
9 Hb_004987_020 0.1122938261 - - -
10 Hb_000417_300 0.1134989874 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
11 Hb_012760_030 0.116942854 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
12 Hb_000890_030 0.1199432216 - - plastid CUL1 [Hevea brasiliensis]
13 Hb_063716_090 0.1201604553 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003777_130 0.1208088123 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
15 Hb_000395_040 0.1217865378 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
16 Hb_001135_030 0.1221168141 - - PREDICTED: interaptin-like [Jatropha curcas]
17 Hb_003209_130 0.1228993156 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_003975_010 0.1261632506 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
19 Hb_000671_080 0.1278163843 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
20 Hb_002272_240 0.1284604695 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_017948_030 Hb_017948_030 Hb_000671_030 Hb_000671_030 Hb_017948_030--Hb_000671_030 Hb_001691_040 Hb_001691_040 Hb_017948_030--Hb_001691_040 Hb_000912_100 Hb_000912_100 Hb_017948_030--Hb_000912_100 Hb_003599_030 Hb_003599_030 Hb_017948_030--Hb_003599_030 Hb_000203_270 Hb_000203_270 Hb_017948_030--Hb_000203_270 Hb_000622_340 Hb_000622_340 Hb_017948_030--Hb_000622_340 Hb_003777_130 Hb_003777_130 Hb_000671_030--Hb_003777_130 Hb_012760_030 Hb_012760_030 Hb_000671_030--Hb_012760_030 Hb_003849_220 Hb_003849_220 Hb_000671_030--Hb_003849_220 Hb_001623_110 Hb_001623_110 Hb_000671_030--Hb_001623_110 Hb_007919_110 Hb_007919_110 Hb_000671_030--Hb_007919_110 Hb_003975_010 Hb_003975_010 Hb_001691_040--Hb_003975_010 Hb_002272_240 Hb_002272_240 Hb_001691_040--Hb_002272_240 Hb_001691_040--Hb_000912_100 Hb_001754_020 Hb_001754_020 Hb_001691_040--Hb_001754_020 Hb_000395_040 Hb_000395_040 Hb_001691_040--Hb_000395_040 Hb_002876_210 Hb_002876_210 Hb_001691_040--Hb_002876_210 Hb_002217_090 Hb_002217_090 Hb_000912_100--Hb_002217_090 Hb_000417_300 Hb_000417_300 Hb_000912_100--Hb_000417_300 Hb_000912_100--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_000912_100--Hb_002046_060 Hb_000912_100--Hb_002876_210 Hb_000705_180 Hb_000705_180 Hb_003599_030--Hb_000705_180 Hb_000671_080 Hb_000671_080 Hb_003599_030--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_003599_030--Hb_001257_100 Hb_001329_200 Hb_001329_200 Hb_003599_030--Hb_001329_200 Hb_009372_020 Hb_009372_020 Hb_003599_030--Hb_009372_020 Hb_009615_160 Hb_009615_160 Hb_003599_030--Hb_009615_160 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002849_070 Hb_002849_070 Hb_000203_270--Hb_002849_070 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_000200_170 Hb_000200_170 Hb_000203_270--Hb_000200_170 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_000203_270--Hb_003599_030 Hb_000931_020 Hb_000931_020 Hb_000622_340--Hb_000931_020 Hb_000890_030 Hb_000890_030 Hb_000622_340--Hb_000890_030 Hb_000991_040 Hb_000991_040 Hb_000622_340--Hb_000991_040 Hb_000622_340--Hb_012760_030 Hb_008937_010 Hb_008937_010 Hb_000622_340--Hb_008937_010 Hb_010407_060 Hb_010407_060 Hb_000622_340--Hb_010407_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34229 18.6971 12.2669 26.2222 8.3131 5.7886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.05649 4.72998 6.44984 5.69106 8.9949

CAGE analysis