Hb_003159_150

Information

Type -
Description -
Location Contig3159: 191282-193290
Sequence    

Annotation

kegg
ID rcu:RCOM_0925900
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012078676.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID B9RPA4
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0925900 PE=3 SV=1
Gene Ontology
ID GO:0005634
description glucan endo- -beta-glucosidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_150 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
2 Hb_001123_250 0.14448225 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
3 Hb_002893_030 0.164118415 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
4 Hb_000365_280 0.1905488578 - - calcium binding protein/cast, putative [Ricinus communis]
5 Hb_004007_070 0.2012039589 - - adenylsulfate kinase, putative [Ricinus communis]
6 Hb_000371_120 0.2055402073 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
7 Hb_000086_090 0.2095669117 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
8 Hb_093084_020 0.2101368283 - - PREDICTED: lysM domain receptor-like kinase 3 [Populus euphratica]
9 Hb_000479_060 0.2104581435 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
10 Hb_000574_300 0.2108967486 - - receptor-kinase, putative [Ricinus communis]
11 Hb_000028_500 0.216525646 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000349_200 0.2181070204 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
13 Hb_012395_110 0.2205340825 - - PREDICTED: peroxygenase [Jatropha curcas]
14 Hb_103942_030 0.2219783404 - - protein with unknown function [Ricinus communis]
15 Hb_000098_170 0.2224548827 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_003849_190 0.2231677388 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
17 Hb_000109_190 0.2271824665 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
18 Hb_188281_010 0.2272101017 - - carboxylic ester hydrolase, putative [Ricinus communis]
19 Hb_003929_230 0.2325851099 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
20 Hb_001474_050 0.2329778499 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003159_150 Hb_003159_150 Hb_001123_250 Hb_001123_250 Hb_003159_150--Hb_001123_250 Hb_002893_030 Hb_002893_030 Hb_003159_150--Hb_002893_030 Hb_000365_280 Hb_000365_280 Hb_003159_150--Hb_000365_280 Hb_004007_070 Hb_004007_070 Hb_003159_150--Hb_004007_070 Hb_000371_120 Hb_000371_120 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090 Hb_009476_160 Hb_009476_160 Hb_001123_250--Hb_009476_160 Hb_000479_060 Hb_000479_060 Hb_001123_250--Hb_000479_060 Hb_001999_200 Hb_001999_200 Hb_001123_250--Hb_001999_200 Hb_000003_700 Hb_000003_700 Hb_001123_250--Hb_000003_700 Hb_001123_250--Hb_000365_280 Hb_002893_030--Hb_004007_070 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_002026_050 Hb_002026_050 Hb_002893_030--Hb_002026_050 Hb_000365_280--Hb_000479_060 Hb_000365_280--Hb_004007_070 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000109_190 Hb_000109_190 Hb_000365_280--Hb_000109_190 Hb_000365_280--Hb_002026_050 Hb_004007_070--Hb_012395_110 Hb_000098_170 Hb_000098_170 Hb_004007_070--Hb_000098_170 Hb_004007_070--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_004007_070--Hb_000049_270 Hb_009189_050 Hb_009189_050 Hb_000371_120--Hb_009189_050 Hb_000077_160 Hb_000077_160 Hb_000371_120--Hb_000077_160 Hb_003209_090 Hb_003209_090 Hb_000371_120--Hb_003209_090 Hb_001102_200 Hb_001102_200 Hb_000371_120--Hb_001102_200 Hb_005408_080 Hb_005408_080 Hb_000371_120--Hb_005408_080 Hb_001474_050 Hb_001474_050 Hb_000371_120--Hb_001474_050 Hb_000086_090--Hb_000098_170 Hb_000086_090--Hb_012395_110 Hb_001102_160 Hb_001102_160 Hb_000086_090--Hb_001102_160 Hb_010883_180 Hb_010883_180 Hb_000086_090--Hb_010883_180 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0986601 1.52832 1.04372 2.9097 0.0414456 0.0512682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192698 0 0.806238 0.0706216 0.950478

CAGE analysis