Hb_000003_700

Information

Type -
Description -
Location Contig3: 540495-543142
Sequence    

Annotation

kegg
ID rcu:RCOM_1489450
description Histidine-containing phosphotransfer protein, putative (EC:1.3.1.74)
nr
ID XP_002515965.1
description Histidine-containing phosphotransfer protein, putative [Ricinus communis]
swissprot
ID Q9LU15
description Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2
trembl
ID B9RQE6
description Histidine-containing phosphotransfer protein, putative OS=Ricinus communis GN=RCOM_1489450 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine-containing phosphotransfer protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31452: 534577-543237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_700 0.0 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
2 Hb_002066_010 0.1585389264 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
3 Hb_001699_030 0.1602211768 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
4 Hb_020301_010 0.1677796244 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000172_070 0.1695810169 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_005588_130 0.178304122 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002973_030 0.1806514415 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_002004_010 0.184002842 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
9 Hb_009476_160 0.184493677 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
10 Hb_007292_050 0.1848066223 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_000403_100 0.1852161649 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
12 Hb_001541_160 0.1876792292 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_000984_110 0.1883490749 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
14 Hb_013691_060 0.1888731028 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
15 Hb_000638_180 0.1899411228 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
16 Hb_001498_050 0.191045337 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
17 Hb_000342_120 0.1917722439 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
18 Hb_003175_090 0.1937197027 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
19 Hb_001123_250 0.1945070653 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
20 Hb_000479_060 0.1957580711 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]

Gene co-expression network

sample Hb_000003_700 Hb_000003_700 Hb_002066_010 Hb_002066_010 Hb_000003_700--Hb_002066_010 Hb_001699_030 Hb_001699_030 Hb_000003_700--Hb_001699_030 Hb_020301_010 Hb_020301_010 Hb_000003_700--Hb_020301_010 Hb_000172_070 Hb_000172_070 Hb_000003_700--Hb_000172_070 Hb_005588_130 Hb_005588_130 Hb_000003_700--Hb_005588_130 Hb_002973_030 Hb_002973_030 Hb_000003_700--Hb_002973_030 Hb_000258_230 Hb_000258_230 Hb_002066_010--Hb_000258_230 Hb_002066_010--Hb_000172_070 Hb_152277_010 Hb_152277_010 Hb_002066_010--Hb_152277_010 Hb_007103_020 Hb_007103_020 Hb_002066_010--Hb_007103_020 Hb_002250_140 Hb_002250_140 Hb_002066_010--Hb_002250_140 Hb_000270_750 Hb_000270_750 Hb_002066_010--Hb_000270_750 Hb_003175_090 Hb_003175_090 Hb_001699_030--Hb_003175_090 Hb_001699_030--Hb_020301_010 Hb_001178_040 Hb_001178_040 Hb_001699_030--Hb_001178_040 Hb_002311_110 Hb_002311_110 Hb_001699_030--Hb_002311_110 Hb_001699_030--Hb_005588_130 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_010267_030 Hb_010267_030 Hb_020301_010--Hb_010267_030 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_005588_130--Hb_000172_070 Hb_004730_010 Hb_004730_010 Hb_005588_130--Hb_004730_010 Hb_005588_130--Hb_003175_090 Hb_000342_120 Hb_000342_120 Hb_005588_130--Hb_000342_120 Hb_005588_130--Hb_020301_010 Hb_002004_010 Hb_002004_010 Hb_002973_030--Hb_002004_010 Hb_002973_030--Hb_002066_010 Hb_000479_060 Hb_000479_060 Hb_002973_030--Hb_000479_060 Hb_000753_120 Hb_000753_120 Hb_002973_030--Hb_000753_120 Hb_002973_030--Hb_000270_750 Hb_013405_100 Hb_013405_100 Hb_002973_030--Hb_013405_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645105 13.6836 3.00431 16.115 0.550947 1.6653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.454854 0 0.794281 0.299318 7.22135

CAGE analysis