Hb_003175_090

Information

Type -
Description -
Location Contig3175: 62788-68551
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01120g
description POPTRDRAFT_771004; hypothetical protein
nr
ID XP_002317166.2
description hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HZF0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33451: 66676-67272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_090 0.0 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
2 Hb_001699_030 0.1417805784 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
3 Hb_005588_130 0.1460454467 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001178_040 0.1695518421 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
5 Hb_004648_020 0.1695919714 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
6 Hb_020301_010 0.1890917267 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002374_550 0.1915171938 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
8 Hb_000003_700 0.1937197027 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_003952_130 0.204882808 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_005656_160 0.210633655 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
11 Hb_002311_110 0.2108790458 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000172_070 0.2142332564 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_000666_120 0.2148738398 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_006185_040 0.2159784732 - - PREDICTED: verprolin [Jatropha curcas]
15 Hb_000403_100 0.2168294174 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
16 Hb_009476_160 0.2241943001 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
17 Hb_005643_080 0.2246385237 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
18 Hb_000342_120 0.2263492475 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
19 Hb_050847_030 0.2282647785 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
20 Hb_002066_010 0.2339902076 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003175_090 Hb_003175_090 Hb_001699_030 Hb_001699_030 Hb_003175_090--Hb_001699_030 Hb_005588_130 Hb_005588_130 Hb_003175_090--Hb_005588_130 Hb_001178_040 Hb_001178_040 Hb_003175_090--Hb_001178_040 Hb_004648_020 Hb_004648_020 Hb_003175_090--Hb_004648_020 Hb_020301_010 Hb_020301_010 Hb_003175_090--Hb_020301_010 Hb_002374_550 Hb_002374_550 Hb_003175_090--Hb_002374_550 Hb_001699_030--Hb_020301_010 Hb_001699_030--Hb_001178_040 Hb_002311_110 Hb_002311_110 Hb_001699_030--Hb_002311_110 Hb_001699_030--Hb_005588_130 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040 Hb_000172_070 Hb_000172_070 Hb_005588_130--Hb_000172_070 Hb_004730_010 Hb_004730_010 Hb_005588_130--Hb_004730_010 Hb_000342_120 Hb_000342_120 Hb_005588_130--Hb_000342_120 Hb_005588_130--Hb_020301_010 Hb_154538_010 Hb_154538_010 Hb_001178_040--Hb_154538_010 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_000342_140 Hb_000342_140 Hb_001178_040--Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_001178_040--Hb_003637_020 Hb_001855_020 Hb_001855_020 Hb_004648_020--Hb_001855_020 Hb_002186_030 Hb_002186_030 Hb_004648_020--Hb_002186_030 Hb_006951_010 Hb_006951_010 Hb_004648_020--Hb_006951_010 Hb_000403_100 Hb_000403_100 Hb_004648_020--Hb_000403_100 Hb_004648_020--Hb_000172_070 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_010267_030 Hb_010267_030 Hb_020301_010--Hb_010267_030 Hb_005941_030 Hb_005941_030 Hb_002374_550--Hb_005941_030 Hb_000042_060 Hb_000042_060 Hb_002374_550--Hb_000042_060 Hb_007044_160 Hb_007044_160 Hb_002374_550--Hb_007044_160 Hb_003102_030 Hb_003102_030 Hb_002374_550--Hb_003102_030 Hb_000914_050 Hb_000914_050 Hb_002374_550--Hb_000914_050 Hb_014361_090 Hb_014361_090 Hb_002374_550--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0249165 0.64187 0.133787 0.652642 0.140728 0.0913418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140789 0.247385

CAGE analysis