Hb_004648_020

Information

Type -
Description -
Location Contig4648: 13595-15015
Sequence    

Annotation

kegg
ID tcc:TCM_005434
description Uncharacterized protein isoform 1
nr
ID XP_012083497.1
description PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2QYB6
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G156200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_020 0.0 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
2 Hb_001855_020 0.1499099526 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
3 Hb_002186_030 0.1670908902 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
4 Hb_003175_090 0.1695919714 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
5 Hb_006951_010 0.1784969519 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
6 Hb_000403_100 0.1796042091 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
7 Hb_000172_070 0.182464262 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_028707_100 0.1851577507 - - hypothetical protein RCOM_1687010 [Ricinus communis]
9 Hb_000666_120 0.1861174134 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_068307_010 0.1871757688 - - PREDICTED: phosphomannomutase [Eucalyptus grandis]
11 Hb_000482_120 0.1873243789 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
12 Hb_006185_040 0.1873276113 - - PREDICTED: verprolin [Jatropha curcas]
13 Hb_001999_200 0.1880739963 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_005643_080 0.1886360988 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
15 Hb_007292_050 0.1893972072 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_114733_010 0.1898836195 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
17 Hb_002598_040 0.1917949855 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
18 Hb_007441_360 0.192272377 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
19 Hb_001675_310 0.1934904254 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
20 Hb_000384_020 0.193693802 - - sucrose phosphate syntase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004648_020 Hb_004648_020 Hb_001855_020 Hb_001855_020 Hb_004648_020--Hb_001855_020 Hb_002186_030 Hb_002186_030 Hb_004648_020--Hb_002186_030 Hb_003175_090 Hb_003175_090 Hb_004648_020--Hb_003175_090 Hb_006951_010 Hb_006951_010 Hb_004648_020--Hb_006951_010 Hb_000403_100 Hb_000403_100 Hb_004648_020--Hb_000403_100 Hb_000172_070 Hb_000172_070 Hb_004648_020--Hb_000172_070 Hb_000482_120 Hb_000482_120 Hb_001855_020--Hb_000482_120 Hb_012410_010 Hb_012410_010 Hb_001855_020--Hb_012410_010 Hb_010337_040 Hb_010337_040 Hb_001855_020--Hb_010337_040 Hb_007101_070 Hb_007101_070 Hb_001855_020--Hb_007101_070 Hb_003702_070 Hb_003702_070 Hb_001855_020--Hb_003702_070 Hb_002186_030--Hb_006951_010 Hb_000201_070 Hb_000201_070 Hb_002186_030--Hb_000201_070 Hb_004374_170 Hb_004374_170 Hb_002186_030--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002186_030--Hb_005946_200 Hb_001115_100 Hb_001115_100 Hb_002186_030--Hb_001115_100 Hb_002804_070 Hb_002804_070 Hb_002186_030--Hb_002804_070 Hb_001699_030 Hb_001699_030 Hb_003175_090--Hb_001699_030 Hb_005588_130 Hb_005588_130 Hb_003175_090--Hb_005588_130 Hb_001178_040 Hb_001178_040 Hb_003175_090--Hb_001178_040 Hb_020301_010 Hb_020301_010 Hb_003175_090--Hb_020301_010 Hb_002374_550 Hb_002374_550 Hb_003175_090--Hb_002374_550 Hb_112145_010 Hb_112145_010 Hb_006951_010--Hb_112145_010 Hb_006951_010--Hb_000201_070 Hb_006951_010--Hb_004374_170 Hb_006951_010--Hb_002804_070 Hb_002170_010 Hb_002170_010 Hb_006951_010--Hb_002170_010 Hb_002598_040 Hb_002598_040 Hb_000403_100--Hb_002598_040 Hb_017700_030 Hb_017700_030 Hb_000403_100--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_001999_200 Hb_001999_200 Hb_000403_100--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_010267_030 Hb_010267_030 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_000172_070--Hb_002170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.688875 0.32433 1.17212 0.138471 0.0586182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0665471 0.274349

CAGE analysis