Hb_007101_070

Information

Type -
Description -
Location Contig7101: 37390-41460
Sequence    

Annotation

kegg
ID rcu:RCOM_0393950
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_012092052.1
description PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067JEY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21784 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55239: 38901-41498
cDNA
(Sanger)
(ID:Location)		 032_J14r.ab1: 38423-42154

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_070 0.0 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
2 Hb_003399_110 0.0945527802 - - conserved hypothetical protein [Ricinus communis]
3 Hb_152914_010 0.1020540547 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
4 Hb_002890_330 0.102833308 - - caspase, putative [Ricinus communis]
5 Hb_103225_030 0.1070330277 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
6 Hb_002186_110 0.110496535 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
7 Hb_000137_050 0.111132863 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001936_120 0.1135250326 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
9 Hb_009785_030 0.1203162697 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
10 Hb_002053_190 0.1210107515 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
11 Hb_000827_020 0.1212223284 - - unnamed protein product [Coffea canephora]
12 Hb_000087_190 0.1213592455 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
13 Hb_000030_230 0.1215604681 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_004607_060 0.122793474 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
15 Hb_000358_060 0.1245970858 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_002960_030 0.1251466237 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
17 Hb_000849_030 0.1255940462 - - PREDICTED: fimbrin-2 [Jatropha curcas]
18 Hb_005741_030 0.1272247334 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
19 Hb_000197_260 0.1274948715 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
20 Hb_002388_070 0.1279011404 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007101_070 Hb_007101_070 Hb_003399_110 Hb_003399_110 Hb_007101_070--Hb_003399_110 Hb_152914_010 Hb_152914_010 Hb_007101_070--Hb_152914_010 Hb_002890_330 Hb_002890_330 Hb_007101_070--Hb_002890_330 Hb_103225_030 Hb_103225_030 Hb_007101_070--Hb_103225_030 Hb_002186_110 Hb_002186_110 Hb_007101_070--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_007101_070--Hb_000137_050 Hb_000827_020 Hb_000827_020 Hb_003399_110--Hb_000827_020 Hb_001541_210 Hb_001541_210 Hb_003399_110--Hb_001541_210 Hb_003399_110--Hb_002890_330 Hb_000358_060 Hb_000358_060 Hb_003399_110--Hb_000358_060 Hb_001936_120 Hb_001936_120 Hb_003399_110--Hb_001936_120 Hb_000197_260 Hb_000197_260 Hb_152914_010--Hb_000197_260 Hb_152914_010--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_152914_010--Hb_002186_110 Hb_180980_010 Hb_180980_010 Hb_152914_010--Hb_180980_010 Hb_002053_190 Hb_002053_190 Hb_002890_330--Hb_002053_190 Hb_002043_070 Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_001541_210 Hb_002960_030 Hb_002960_030 Hb_002890_330--Hb_002960_030 Hb_001405_170 Hb_001405_170 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_003023_030 Hb_003023_030 Hb_103225_030--Hb_003023_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002534_070 Hb_002534_070 Hb_103225_030--Hb_002534_070 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_011381_050 Hb_011381_050 Hb_002186_110--Hb_011381_050 Hb_002186_110--Hb_000197_260 Hb_115572_010 Hb_115572_010 Hb_002186_110--Hb_115572_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_002186_110--Hb_180980_010 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_000137_050--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_000137_050--Hb_000317_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172442 6.80763 5.8583 27.8705 1.24781 0.228699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224191 0.0529202 0.0334565 0.631584 9.65718

CAGE analysis