Hb_003399_110

Information

Type -
Description -
Location Contig3399: 67171-67740
Sequence    

Annotation

kegg
ID rcu:RCOM_1588510
description hypothetical protein
nr
ID XP_002510135.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q39266
description Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1
trembl
ID B9R742
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1588510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003399_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000827_020 0.0691197852 - - unnamed protein product [Coffea canephora]
3 Hb_007101_070 0.0945527802 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
4 Hb_001541_210 0.0993457653 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
5 Hb_002890_330 0.1072096188 - - caspase, putative [Ricinus communis]
6 Hb_000358_060 0.1095283761 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
7 Hb_001936_120 0.1140686381 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
8 Hb_009785_030 0.1144062672 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
9 Hb_002053_190 0.1172735792 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
10 Hb_005741_030 0.1195192171 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
11 Hb_004607_060 0.1200781627 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
12 Hb_036520_030 0.1212834668 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
13 Hb_003893_130 0.1243776331 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_152914_010 0.1286322675 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
15 Hb_002186_110 0.1288895584 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
16 Hb_000000_050 0.12892395 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000012_350 0.129411879 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
18 Hb_000077_250 0.1301002391 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
19 Hb_002960_030 0.1302407636 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
20 Hb_010164_030 0.1304294764 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003399_110 Hb_003399_110 Hb_000827_020 Hb_000827_020 Hb_003399_110--Hb_000827_020 Hb_007101_070 Hb_007101_070 Hb_003399_110--Hb_007101_070 Hb_001541_210 Hb_001541_210 Hb_003399_110--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_003399_110--Hb_002890_330 Hb_000358_060 Hb_000358_060 Hb_003399_110--Hb_000358_060 Hb_001936_120 Hb_001936_120 Hb_003399_110--Hb_001936_120 Hb_000012_350 Hb_000012_350 Hb_000827_020--Hb_000012_350 Hb_000964_040 Hb_000964_040 Hb_000827_020--Hb_000964_040 Hb_001408_080 Hb_001408_080 Hb_000827_020--Hb_001408_080 Hb_012132_050 Hb_012132_050 Hb_000827_020--Hb_012132_050 Hb_009785_030 Hb_009785_030 Hb_000827_020--Hb_009785_030 Hb_152914_010 Hb_152914_010 Hb_007101_070--Hb_152914_010 Hb_007101_070--Hb_002890_330 Hb_103225_030 Hb_103225_030 Hb_007101_070--Hb_103225_030 Hb_002186_110 Hb_002186_110 Hb_007101_070--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_007101_070--Hb_000137_050 Hb_001405_170 Hb_001405_170 Hb_001541_210--Hb_001405_170 Hb_001541_210--Hb_002890_330 Hb_002053_190 Hb_002053_190 Hb_001541_210--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001541_210--Hb_002960_030 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_002043_070 Hb_002043_070 Hb_001541_210--Hb_002043_070 Hb_002890_330--Hb_002053_190 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_002960_030 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_002997_150 Hb_002997_150 Hb_000358_060--Hb_002997_150 Hb_001225_050 Hb_001225_050 Hb_000358_060--Hb_001225_050 Hb_000230_410 Hb_000230_410 Hb_000358_060--Hb_000230_410 Hb_000358_060--Hb_001936_120 Hb_000077_250 Hb_000077_250 Hb_000358_060--Hb_000077_250 Hb_002388_070 Hb_002388_070 Hb_000358_060--Hb_002388_070 Hb_029791_010 Hb_029791_010 Hb_001936_120--Hb_029791_010 Hb_036520_030 Hb_036520_030 Hb_001936_120--Hb_036520_030 Hb_005305_040 Hb_005305_040 Hb_001936_120--Hb_005305_040 Hb_011381_050 Hb_011381_050 Hb_001936_120--Hb_011381_050 Hb_001936_120--Hb_002388_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.408409 0.512615 1.76478 0.0881143 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0352697 0.822377

CAGE analysis