Hb_005588_130

Information

Type -
Description -
Location Contig5588: 117418-120811
Sequence    

Annotation

kegg
ID rcu:RCOM_1590930
description hypothetical protein
nr
ID XP_002510235.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8RZB5
description Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1
trembl
ID B9R7E2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590930 PE=4 SV=1
Gene Ontology
ID GO:0005509
description polcalcin phl p 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000172_070 0.13408634 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_004730_010 0.134156949 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
4 Hb_003175_090 0.1460454467 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]
5 Hb_000342_120 0.148912962 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
6 Hb_020301_010 0.1495952931 - - cytochrome P450, putative [Ricinus communis]
7 Hb_001699_030 0.1554439369 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
8 Hb_050847_030 0.1568008002 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
9 Hb_002004_010 0.1604163352 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
10 Hb_002066_010 0.1614999264 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
11 Hb_000015_230 0.1627055267 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
12 Hb_013691_060 0.1655226392 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
13 Hb_000375_150 0.1667556442 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000325_070 0.1694137902 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000181_390 0.1738232236 - - unknown [Lotus japonicus]
16 Hb_034953_010 0.1742559887 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
17 Hb_003952_130 0.1743966529 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
18 Hb_005694_150 0.1746525731 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
19 Hb_001295_050 0.1752062328 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
20 Hb_000003_700 0.178304122 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005588_130 Hb_005588_130 Hb_000172_070 Hb_000172_070 Hb_005588_130--Hb_000172_070 Hb_004730_010 Hb_004730_010 Hb_005588_130--Hb_004730_010 Hb_003175_090 Hb_003175_090 Hb_005588_130--Hb_003175_090 Hb_000342_120 Hb_000342_120 Hb_005588_130--Hb_000342_120 Hb_020301_010 Hb_020301_010 Hb_005588_130--Hb_020301_010 Hb_001699_030 Hb_001699_030 Hb_005588_130--Hb_001699_030 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_010267_030 Hb_010267_030 Hb_000172_070--Hb_010267_030 Hb_005048_090 Hb_005048_090 Hb_000172_070--Hb_005048_090 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000230_550 Hb_000230_550 Hb_000172_070--Hb_000230_550 Hb_002170_010 Hb_002170_010 Hb_000172_070--Hb_002170_010 Hb_105814_020 Hb_105814_020 Hb_004730_010--Hb_105814_020 Hb_000041_160 Hb_000041_160 Hb_004730_010--Hb_000041_160 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_123078_010 Hb_123078_010 Hb_004730_010--Hb_123078_010 Hb_027474_010 Hb_027474_010 Hb_004730_010--Hb_027474_010 Hb_003175_090--Hb_001699_030 Hb_001178_040 Hb_001178_040 Hb_003175_090--Hb_001178_040 Hb_004648_020 Hb_004648_020 Hb_003175_090--Hb_004648_020 Hb_003175_090--Hb_020301_010 Hb_002374_550 Hb_002374_550 Hb_003175_090--Hb_002374_550 Hb_001496_110 Hb_001496_110 Hb_000342_120--Hb_001496_110 Hb_000342_120--Hb_004730_010 Hb_002004_010 Hb_002004_010 Hb_000342_120--Hb_002004_010 Hb_000342_120--Hb_020301_010 Hb_000342_120--Hb_000041_160 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_020301_010--Hb_010267_030 Hb_001699_030--Hb_020301_010 Hb_001699_030--Hb_001178_040 Hb_002311_110 Hb_002311_110 Hb_001699_030--Hb_002311_110 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0697544 5.08503 0.836473 3.99327 0.469442 0.126105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.163175 2.34315

CAGE analysis