Hb_001496_110

Information

Type -
Description -
Location Contig1496: 99513-106616
Sequence    

Annotation

kegg
ID -
description -
nr
ID CAN76401.1
description hypothetical protein VITISV_044023 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B3Q2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044023 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_110 0.0 - - hypothetical protein VITISV_044023 [Vitis vinifera]
2 Hb_000342_120 0.1234497778 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
3 Hb_004730_010 0.1829897311 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
4 Hb_000041_160 0.1904703979 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
5 Hb_034953_010 0.1923700053 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
6 Hb_002004_010 0.1951224852 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
7 Hb_123078_010 0.1974865669 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_105814_020 0.1988095808 - - berberine bridge enzyme [Hevea brasiliensis]
9 Hb_007802_010 0.2002599912 - - Receptor like protein 6, putative [Theobroma cacao]
10 Hb_020301_010 0.201695539 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001907_050 0.2041273367 - - Receptor like protein 6, putative [Theobroma cacao]
12 Hb_002973_030 0.2083187947 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_005588_130 0.2112390762 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001269_530 0.2148620235 - - ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_001295_050 0.2148793227 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
16 Hb_002820_090 0.2153567926 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
17 Hb_004218_290 0.2157207713 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
18 Hb_027474_010 0.2164798003 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
19 Hb_002335_010 0.2185476599 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
20 Hb_001318_230 0.2213179375 - - Boron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001496_110 Hb_001496_110 Hb_000342_120 Hb_000342_120 Hb_001496_110--Hb_000342_120 Hb_004730_010 Hb_004730_010 Hb_001496_110--Hb_004730_010 Hb_000041_160 Hb_000041_160 Hb_001496_110--Hb_000041_160 Hb_034953_010 Hb_034953_010 Hb_001496_110--Hb_034953_010 Hb_002004_010 Hb_002004_010 Hb_001496_110--Hb_002004_010 Hb_123078_010 Hb_123078_010 Hb_001496_110--Hb_123078_010 Hb_000342_120--Hb_004730_010 Hb_000342_120--Hb_002004_010 Hb_005588_130 Hb_005588_130 Hb_000342_120--Hb_005588_130 Hb_020301_010 Hb_020301_010 Hb_000342_120--Hb_020301_010 Hb_000342_120--Hb_000041_160 Hb_105814_020 Hb_105814_020 Hb_004730_010--Hb_105814_020 Hb_004730_010--Hb_000041_160 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_004730_010--Hb_123078_010 Hb_027474_010 Hb_027474_010 Hb_004730_010--Hb_027474_010 Hb_000041_160--Hb_123078_010 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_000041_160--Hb_105814_020 Hb_000041_160--Hb_027474_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100 Hb_034953_010--Hb_000342_120 Hb_034953_010--Hb_005588_130 Hb_034953_010--Hb_004730_010 Hb_034953_010--Hb_002004_010 Hb_001699_030 Hb_001699_030 Hb_034953_010--Hb_001699_030 Hb_013691_060 Hb_013691_060 Hb_034953_010--Hb_013691_060 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_123078_010--Hb_105814_020 Hb_123078_010--Hb_027474_010 Hb_002267_030 Hb_002267_030 Hb_123078_010--Hb_002267_030 Hb_011101_010 Hb_011101_010 Hb_123078_010--Hb_011101_010 Hb_004218_290 Hb_004218_290 Hb_123078_010--Hb_004218_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0343986 0.40881 0.0218273 0.285775 0 0.0323715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0400303 0.199873

CAGE analysis