Hb_000342_120

Information

Type -
Description -
Location Contig342: 147959-149614
Sequence    

Annotation

kegg
ID rcu:RCOM_0798400
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012077560.1
description PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
swissprot
ID Q9XGZ9
description Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana GN=At5g26010 PE=2 SV=2
trembl
ID A0A067KGI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07694 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35747: 147986-148576 , PASA_asmbl_35748: 148637-149182 , PASA_asmbl_35749: 149194-149755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_120 0.0 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
2 Hb_001496_110 0.1234497778 - - hypothetical protein VITISV_044023 [Vitis vinifera]
3 Hb_004730_010 0.1360358968 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
4 Hb_002004_010 0.1479953012 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
5 Hb_005588_130 0.148912962 - - conserved hypothetical protein [Ricinus communis]
6 Hb_020301_010 0.1524162881 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000041_160 0.1562696481 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
8 Hb_034953_010 0.1577567366 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
9 Hb_123078_010 0.1588134057 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
10 Hb_004218_290 0.1605167881 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
11 Hb_009476_160 0.1624764076 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
12 Hb_001699_030 0.1659827881 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
13 Hb_001269_530 0.1687140742 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_105814_020 0.1692386464 - - berberine bridge enzyme [Hevea brasiliensis]
15 Hb_001907_050 0.1698785186 - - Receptor like protein 6, putative [Theobroma cacao]
16 Hb_001318_230 0.1734334749 - - Boron transporter, putative [Ricinus communis]
17 Hb_002973_030 0.173985976 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_000256_220 0.1768396252 - - PREDICTED: flotillin-like protein 4 [Jatropha curcas]
19 Hb_013691_060 0.1773231078 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
20 Hb_000816_050 0.1785906238 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000342_120 Hb_000342_120 Hb_001496_110 Hb_001496_110 Hb_000342_120--Hb_001496_110 Hb_004730_010 Hb_004730_010 Hb_000342_120--Hb_004730_010 Hb_002004_010 Hb_002004_010 Hb_000342_120--Hb_002004_010 Hb_005588_130 Hb_005588_130 Hb_000342_120--Hb_005588_130 Hb_020301_010 Hb_020301_010 Hb_000342_120--Hb_020301_010 Hb_000041_160 Hb_000041_160 Hb_000342_120--Hb_000041_160 Hb_001496_110--Hb_004730_010 Hb_001496_110--Hb_000041_160 Hb_034953_010 Hb_034953_010 Hb_001496_110--Hb_034953_010 Hb_001496_110--Hb_002004_010 Hb_123078_010 Hb_123078_010 Hb_001496_110--Hb_123078_010 Hb_105814_020 Hb_105814_020 Hb_004730_010--Hb_105814_020 Hb_004730_010--Hb_000041_160 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_004730_010--Hb_123078_010 Hb_027474_010 Hb_027474_010 Hb_004730_010--Hb_027474_010 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_000172_070 Hb_000172_070 Hb_005588_130--Hb_000172_070 Hb_005588_130--Hb_004730_010 Hb_003175_090 Hb_003175_090 Hb_005588_130--Hb_003175_090 Hb_005588_130--Hb_020301_010 Hb_001699_030 Hb_001699_030 Hb_005588_130--Hb_001699_030 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_005643_080 Hb_005643_080 Hb_020301_010--Hb_005643_080 Hb_020301_010--Hb_000172_070 Hb_005396_030 Hb_005396_030 Hb_020301_010--Hb_005396_030 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_010267_030 Hb_010267_030 Hb_020301_010--Hb_010267_030 Hb_000041_160--Hb_123078_010 Hb_002335_010 Hb_002335_010 Hb_000041_160--Hb_002335_010 Hb_000041_160--Hb_105814_020 Hb_000041_160--Hb_027474_010 Hb_000956_100 Hb_000956_100 Hb_000041_160--Hb_000956_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.302333 14.5045 0.968232 10.5883 0.342874 0.68543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.201338 1.52964 6.49225

CAGE analysis