Hb_034953_010

Information

Type -
Description -
Location Contig34953: 7746-8980
Sequence    

Annotation

kegg
ID rcu:RCOM_1249420
description hypothetical protein
nr
ID KDP20154.1
description hypothetical protein JCGZ_00031 [Jatropha curcas]
swissprot
ID Q9M353
description Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1
trembl
ID A0A067JL02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00031 PE=4 SV=1
Gene Ontology
ID GO:0044765
description monovalent cation:proton

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034953_010 0.0 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
2 Hb_000342_120 0.1577567366 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
3 Hb_005588_130 0.1742559887 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004730_010 0.1757733407 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
5 Hb_002004_010 0.176099293 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
6 Hb_001699_030 0.1767585254 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
7 Hb_013691_060 0.1811034453 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
8 Hb_001295_050 0.1812703028 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
9 Hb_002820_090 0.1830173773 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
10 Hb_020301_010 0.1859196041 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000035_420 0.186192358 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
12 Hb_001541_160 0.1864036516 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
13 Hb_105814_020 0.1864364866 - - berberine bridge enzyme [Hevea brasiliensis]
14 Hb_000742_260 0.1920428761 - - hypothetical protein RCOM_1336320 [Ricinus communis]
15 Hb_001496_110 0.1923700053 - - hypothetical protein VITISV_044023 [Vitis vinifera]
16 Hb_000087_180 0.1959891073 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004143_050 0.1975376008 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
18 Hb_002267_030 0.1977565394 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
19 Hb_003145_030 0.20062375 - - conserved hypothetical protein [Ricinus communis]
20 Hb_050847_030 0.2031118458 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]

Gene co-expression network

sample Hb_034953_010 Hb_034953_010 Hb_000342_120 Hb_000342_120 Hb_034953_010--Hb_000342_120 Hb_005588_130 Hb_005588_130 Hb_034953_010--Hb_005588_130 Hb_004730_010 Hb_004730_010 Hb_034953_010--Hb_004730_010 Hb_002004_010 Hb_002004_010 Hb_034953_010--Hb_002004_010 Hb_001699_030 Hb_001699_030 Hb_034953_010--Hb_001699_030 Hb_013691_060 Hb_013691_060 Hb_034953_010--Hb_013691_060 Hb_001496_110 Hb_001496_110 Hb_000342_120--Hb_001496_110 Hb_000342_120--Hb_004730_010 Hb_000342_120--Hb_002004_010 Hb_000342_120--Hb_005588_130 Hb_020301_010 Hb_020301_010 Hb_000342_120--Hb_020301_010 Hb_000041_160 Hb_000041_160 Hb_000342_120--Hb_000041_160 Hb_000172_070 Hb_000172_070 Hb_005588_130--Hb_000172_070 Hb_005588_130--Hb_004730_010 Hb_003175_090 Hb_003175_090 Hb_005588_130--Hb_003175_090 Hb_005588_130--Hb_020301_010 Hb_005588_130--Hb_001699_030 Hb_105814_020 Hb_105814_020 Hb_004730_010--Hb_105814_020 Hb_004730_010--Hb_000041_160 Hb_000813_090 Hb_000813_090 Hb_004730_010--Hb_000813_090 Hb_000015_230 Hb_000015_230 Hb_004730_010--Hb_000015_230 Hb_123078_010 Hb_123078_010 Hb_004730_010--Hb_123078_010 Hb_027474_010 Hb_027474_010 Hb_004730_010--Hb_027474_010 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002849_110 Hb_002849_110 Hb_002004_010--Hb_002849_110 Hb_001699_030--Hb_003175_090 Hb_001699_030--Hb_020301_010 Hb_001178_040 Hb_001178_040 Hb_001699_030--Hb_001178_040 Hb_001699_030--Hb_002311_110 Hb_004282_040 Hb_004282_040 Hb_001699_030--Hb_004282_040 Hb_000742_260 Hb_000742_260 Hb_013691_060--Hb_000742_260 Hb_005694_150 Hb_005694_150 Hb_013691_060--Hb_005694_150 Hb_000365_190 Hb_000365_190 Hb_013691_060--Hb_000365_190 Hb_000325_070 Hb_000325_070 Hb_013691_060--Hb_000325_070 Hb_113396_010 Hb_113396_010 Hb_013691_060--Hb_113396_010 Hb_000375_150 Hb_000375_150 Hb_013691_060--Hb_000375_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.324984 13.0186 0.521671 6.80622 0.338851 0.34179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133127 0.244332 0.0646722 0.182037 3.88378

CAGE analysis