Hb_005396_030

Information

Type -
Description -
Location Contig5396: 14935-15805
Sequence    

Annotation

kegg
ID rcu:RCOM_0704120
description hypothetical protein
nr
ID XP_002524380.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEG1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47754: 14357-15233
cDNA
(Sanger)
(ID:Location)		 002_O20.ab1: 14358-15233 , 005_P02.ab1: 14358-15233 , 009_P10.ab1: 14357-15233 , 010_L20.ab1: 14526-15233 , 013_N01.ab1: 14358-15233 , 020_F02.ab1: 14358-15236 , 029_I03.ab1: 14361-15233 , 033_H14.ab1: 14358-15233 , 035_E18.ab1: 14358-15236 , 040_B04.ab1: 14358-15233 , 042_D18.ab1: 14358-15233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000403_100 0.1173907136 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
3 Hb_017700_030 0.1179531272 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
4 Hb_002035_130 0.1225103199 - - plasma membrane H+-ATPase [Hevea brasiliensis]
5 Hb_111985_090 0.1311703921 - - hypothetical protein RCOM_1595950 [Ricinus communis]
6 Hb_005643_080 0.1321694898 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
7 Hb_020301_010 0.1337551601 - - cytochrome P450, putative [Ricinus communis]
8 Hb_011985_020 0.144400346 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
9 Hb_002598_040 0.1463099281 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
10 Hb_000087_190 0.146392407 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
11 Hb_003582_030 0.1479766052 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
12 Hb_000705_070 0.1482021979 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001016_040 0.1482360698 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000983_110 0.1483296894 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
15 Hb_000201_050 0.1496644072 - - -
16 Hb_011314_010 0.1506035534 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
17 Hb_009225_070 0.1510389254 - - tonoplast intrinsic protein, putative [Ricinus communis]
18 Hb_114733_010 0.153529835 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_080601_010 0.1536780061 - - metallothionein 3-like protein [Hevea brasiliensis]
20 Hb_008566_070 0.1539358704 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005396_030 Hb_005396_030 Hb_000403_100 Hb_000403_100 Hb_005396_030--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_005396_030--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_005396_030--Hb_002035_130 Hb_111985_090 Hb_111985_090 Hb_005396_030--Hb_111985_090 Hb_005643_080 Hb_005643_080 Hb_005396_030--Hb_005643_080 Hb_020301_010 Hb_020301_010 Hb_005396_030--Hb_020301_010 Hb_002598_040 Hb_002598_040 Hb_000403_100--Hb_002598_040 Hb_000403_100--Hb_017700_030 Hb_000403_100--Hb_002035_130 Hb_001999_200 Hb_001999_200 Hb_000403_100--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_017700_030--Hb_002598_040 Hb_000816_150 Hb_000816_150 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_002035_130--Hb_002598_040 Hb_002035_130--Hb_005643_080 Hb_002035_130--Hb_017700_030 Hb_001080_120 Hb_001080_120 Hb_002035_130--Hb_001080_120 Hb_008566_070 Hb_008566_070 Hb_111985_090--Hb_008566_070 Hb_003906_150 Hb_003906_150 Hb_111985_090--Hb_003906_150 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_111985_090--Hb_005643_080 Hb_005643_080--Hb_008566_070 Hb_006951_010 Hb_006951_010 Hb_005643_080--Hb_006951_010 Hb_000604_050 Hb_000604_050 Hb_005643_080--Hb_000604_050 Hb_000201_070 Hb_000201_070 Hb_005643_080--Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_005643_080--Hb_010267_030 Hb_001295_050 Hb_001295_050 Hb_020301_010--Hb_001295_050 Hb_020301_010--Hb_005643_080 Hb_000172_070 Hb_000172_070 Hb_020301_010--Hb_000172_070 Hb_004586_230 Hb_004586_230 Hb_020301_010--Hb_004586_230 Hb_020301_010--Hb_010267_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8075 1130.27 184.796 2494.79 23.4686 100.385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8165 5.06517 0 119.445 422.342

CAGE analysis