Hb_001080_120

Information

Type -
Description -
Location Contig1080: 61855-64796
Sequence    

Annotation

kegg
ID rcu:RCOM_1601020
description Spotted leaf protein, putative
nr
ID XP_002510676.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID Q681N2
description U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2
trembl
ID B9R8N3
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_1601020 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02412: 64245-64625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_120 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_080601_010 0.1520004163 - - metallothionein 3-like protein [Hevea brasiliensis]
3 Hb_103225_030 0.1583066046 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
4 Hb_002035_130 0.1595605958 - - plasma membrane H+-ATPase [Hevea brasiliensis]
5 Hb_000030_230 0.1645528477 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_000403_100 0.1654219323 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
7 Hb_003023_030 0.1674874655 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
8 Hb_007101_070 0.1675516717 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
9 Hb_002534_070 0.1678387431 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
10 Hb_002598_040 0.1683246646 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
11 Hb_002762_100 0.1689316007 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000327_320 0.1691790957 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
13 Hb_000000_260 0.1699825805 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
14 Hb_002890_330 0.170670466 - - caspase, putative [Ricinus communis]
15 Hb_001999_200 0.1741346398 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_000087_190 0.1742746686 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
17 Hb_002053_020 0.1767597146 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_002066_010 0.1797087831 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
19 Hb_017700_030 0.183729505 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
20 Hb_004102_200 0.1839380531 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_120 Hb_001080_120 Hb_080601_010 Hb_080601_010 Hb_001080_120--Hb_080601_010 Hb_103225_030 Hb_103225_030 Hb_001080_120--Hb_103225_030 Hb_002035_130 Hb_002035_130 Hb_001080_120--Hb_002035_130 Hb_000030_230 Hb_000030_230 Hb_001080_120--Hb_000030_230 Hb_000403_100 Hb_000403_100 Hb_001080_120--Hb_000403_100 Hb_003023_030 Hb_003023_030 Hb_001080_120--Hb_003023_030 Hb_002534_070 Hb_002534_070 Hb_080601_010--Hb_002534_070 Hb_080601_010--Hb_003023_030 Hb_080601_010--Hb_000030_230 Hb_004450_090 Hb_004450_090 Hb_080601_010--Hb_004450_090 Hb_002186_170 Hb_002186_170 Hb_080601_010--Hb_002186_170 Hb_000000_260 Hb_000000_260 Hb_080601_010--Hb_000000_260 Hb_005741_030 Hb_005741_030 Hb_103225_030--Hb_005741_030 Hb_103225_030--Hb_003023_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_103225_030--Hb_002534_070 Hb_002762_100 Hb_002762_100 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_002035_130--Hb_000403_100 Hb_005396_030 Hb_005396_030 Hb_002035_130--Hb_005396_030 Hb_002598_040 Hb_002598_040 Hb_002035_130--Hb_002598_040 Hb_005643_080 Hb_005643_080 Hb_002035_130--Hb_005643_080 Hb_017700_030 Hb_017700_030 Hb_002035_130--Hb_017700_030 Hb_000307_060 Hb_000307_060 Hb_000030_230--Hb_000307_060 Hb_003582_030 Hb_003582_030 Hb_000030_230--Hb_003582_030 Hb_000317_170 Hb_000317_170 Hb_000030_230--Hb_000317_170 Hb_000087_190 Hb_000087_190 Hb_000030_230--Hb_000087_190 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000403_100--Hb_002598_040 Hb_000403_100--Hb_017700_030 Hb_000403_100--Hb_005396_030 Hb_001999_200 Hb_001999_200 Hb_000403_100--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_000403_100--Hb_114733_010 Hb_003023_030--Hb_002534_070 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_002960_030 Hb_002960_030 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_000646_040 Hb_000646_040 Hb_003023_030--Hb_000646_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0255509 0.236533 0.110332 0.635364 0.0103143 0.0198892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0184213 0 0 0.194462

CAGE analysis