Hb_000230_550

Information

Type -
Description -
Location Contig230: 531923-532903
Sequence    

Annotation

kegg
ID rcu:RCOM_0912370
description ATP binding protein, putative (EC:2.5.1.8)
nr
ID XP_012069518.1
description PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
swissprot
ID Q94ID2
description Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2
trembl
ID A0A067L6H5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02098 PE=4 SV=1
Gene Ontology
ID GO:0008033
description adenylate isopentenyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_550 0.0 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
2 Hb_005048_090 0.0854639291 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
3 Hb_002170_010 0.1082273509 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
4 Hb_000172_070 0.1085925312 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_010267_030 0.1093487728 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
6 Hb_000984_110 0.1122549457 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
7 Hb_003145_030 0.1212924817 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001295_050 0.1242852853 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]
9 Hb_000201_070 0.1257709362 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
10 Hb_112145_010 0.1315566378 - - kinase, putative [Ricinus communis]
11 Hb_000974_030 0.1389810348 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
12 Hb_000181_390 0.1454604512 - - unknown [Lotus japonicus]
13 Hb_006951_010 0.1468822887 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
14 Hb_005618_010 0.1482566507 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
15 Hb_000227_350 0.1503997465 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
16 Hb_005643_080 0.1548286945 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
17 Hb_020301_010 0.1556752618 - - cytochrome P450, putative [Ricinus communis]
18 Hb_128216_010 0.1571510766 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
19 Hb_080601_010 0.1637649595 - - metallothionein 3-like protein [Hevea brasiliensis]
20 Hb_004102_200 0.1663384783 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_550 Hb_000230_550 Hb_005048_090 Hb_005048_090 Hb_000230_550--Hb_005048_090 Hb_002170_010 Hb_002170_010 Hb_000230_550--Hb_002170_010 Hb_000172_070 Hb_000172_070 Hb_000230_550--Hb_000172_070 Hb_010267_030 Hb_010267_030 Hb_000230_550--Hb_010267_030 Hb_000984_110 Hb_000984_110 Hb_000230_550--Hb_000984_110 Hb_003145_030 Hb_003145_030 Hb_000230_550--Hb_003145_030 Hb_005048_090--Hb_000984_110 Hb_005048_090--Hb_010267_030 Hb_001295_050 Hb_001295_050 Hb_005048_090--Hb_001295_050 Hb_005048_090--Hb_000172_070 Hb_005048_090--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_002170_010--Hb_128216_010 Hb_112145_010 Hb_112145_010 Hb_002170_010--Hb_112145_010 Hb_002170_010--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_002170_010--Hb_006951_010 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070 Hb_005618_010 Hb_005618_010 Hb_000172_070--Hb_005618_010 Hb_000172_070--Hb_010267_030 Hb_007292_050 Hb_007292_050 Hb_000172_070--Hb_007292_050 Hb_000172_070--Hb_002170_010 Hb_000201_070 Hb_000201_070 Hb_010267_030--Hb_000201_070 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_112145_010 Hb_061783_010 Hb_061783_010 Hb_000984_110--Hb_061783_010 Hb_000984_110--Hb_001295_050 Hb_000984_110--Hb_000172_070 Hb_004102_200 Hb_004102_200 Hb_000984_110--Hb_004102_200 Hb_000974_030 Hb_000974_030 Hb_003145_030--Hb_000974_030 Hb_003145_030--Hb_005048_090 Hb_003145_030--Hb_001295_050 Hb_000181_390 Hb_000181_390 Hb_003145_030--Hb_000181_390 Hb_003145_030--Hb_010267_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.677225 0.105751 0.858016 0.0212357 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.250185

CAGE analysis