Hb_001855_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig1855: 35574-36035
Sequence    

Annotation

kegg
ID rcu:RCOM_1586500
description DNA binding protein, putative
nr
ID XP_002510058.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FMC2
description Basic leucine zipper 43 OS=Arabidopsis thaliana GN=BZIP43 PE=1 SV=1
trembl
ID B9R6W5
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1586500 PE=4 SV=1
Gene Ontology
ID GO:0003700
description basic leucine zipper 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001855_020 0.0 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
2 Hb_000482_120 0.1253432236 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
3 Hb_004648_020 0.1499099526 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
4 Hb_012410_010 0.1700430573 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_010337_040 0.1727256678 - - -
6 Hb_007101_070 0.1789361713 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
7 Hb_003702_070 0.18426954 - - unnamed protein product [Vitis vinifera]
8 Hb_000692_100 0.1897501788 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_000309_060 0.1917705249 - - hypothetical protein JCGZ_09609 [Jatropha curcas]
10 Hb_001322_100 0.1929353498 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
11 Hb_011930_180 0.1961553002 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002374_550 0.1970943427 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
13 Hb_003399_110 0.198090082 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000453_020 0.2017707594 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000827_020 0.2018099953 - - unnamed protein product [Coffea canephora]
16 Hb_011994_020 0.2064883447 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
17 Hb_154038_040 0.2067147826 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_004223_240 0.208148044 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
19 Hb_006185_040 0.2096117724 - - PREDICTED: verprolin [Jatropha curcas]
20 Hb_000574_170 0.2111569245 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]

Gene co-expression network

sample Hb_001855_020 Hb_001855_020 Hb_000482_120 Hb_000482_120 Hb_001855_020--Hb_000482_120 Hb_004648_020 Hb_004648_020 Hb_001855_020--Hb_004648_020 Hb_012410_010 Hb_012410_010 Hb_001855_020--Hb_012410_010 Hb_010337_040 Hb_010337_040 Hb_001855_020--Hb_010337_040 Hb_007101_070 Hb_007101_070 Hb_001855_020--Hb_007101_070 Hb_003702_070 Hb_003702_070 Hb_001855_020--Hb_003702_070 Hb_000453_020 Hb_000453_020 Hb_000482_120--Hb_000453_020 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_000482_120--Hb_010337_040 Hb_002186_030 Hb_002186_030 Hb_004648_020--Hb_002186_030 Hb_003175_090 Hb_003175_090 Hb_004648_020--Hb_003175_090 Hb_006951_010 Hb_006951_010 Hb_004648_020--Hb_006951_010 Hb_000403_100 Hb_000403_100 Hb_004648_020--Hb_000403_100 Hb_000172_070 Hb_000172_070 Hb_004648_020--Hb_000172_070 Hb_155666_010 Hb_155666_010 Hb_012410_010--Hb_155666_010 Hb_022693_090 Hb_022693_090 Hb_012410_010--Hb_022693_090 Hb_004625_020 Hb_004625_020 Hb_012410_010--Hb_004625_020 Hb_152914_010 Hb_152914_010 Hb_012410_010--Hb_152914_010 Hb_000453_290 Hb_000453_290 Hb_012410_010--Hb_000453_290 Hb_000367_320 Hb_000367_320 Hb_012410_010--Hb_000367_320 Hb_010337_040--Hb_000453_020 Hb_000327_320 Hb_000327_320 Hb_010337_040--Hb_000327_320 Hb_010337_040--Hb_000574_170 Hb_000395_310 Hb_000395_310 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010 Hb_003399_110 Hb_003399_110 Hb_007101_070--Hb_003399_110 Hb_007101_070--Hb_152914_010 Hb_002890_330 Hb_002890_330 Hb_007101_070--Hb_002890_330 Hb_103225_030 Hb_103225_030 Hb_007101_070--Hb_103225_030 Hb_002186_110 Hb_002186_110 Hb_007101_070--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_007101_070--Hb_000137_050 Hb_014990_010 Hb_014990_010 Hb_003702_070--Hb_014990_010 Hb_003702_070--Hb_000692_100 Hb_000462_190 Hb_000462_190 Hb_003702_070--Hb_000462_190 Hb_001322_100 Hb_001322_100 Hb_003702_070--Hb_001322_100 Hb_000417_020 Hb_000417_020 Hb_003702_070--Hb_000417_020 Hb_003702_070--Hb_000482_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.62665 1.51413 5.25644 1.04366 0.197438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.555322 1.76732

CAGE analysis