Hb_000327_320

Information

Type -
Description -
Location Contig327: 350617-353088
Sequence    

Annotation

kegg
ID rcu:RCOM_0746010
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012073103.1
description PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
swissprot
ID Q9FN92
description Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=3 SV=1
trembl
ID A0A067LC85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06607 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase herk 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34403: 350565-350958 , PASA_asmbl_34404: 353184-353470 , PASA_asmbl_34405: 353509-353697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_320 0.0 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
2 Hb_012395_250 0.1219583532 - - hypothetical protein RCOM_1217340 [Ricinus communis]
3 Hb_000087_190 0.1234180735 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
4 Hb_001369_190 0.1243869606 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
5 Hb_007101_070 0.1281946829 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
6 Hb_002388_070 0.1343462317 - - ring finger protein, putative [Ricinus communis]
7 Hb_010337_040 0.1369976104 - - -
8 Hb_000614_120 0.137471101 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
9 Hb_000093_010 0.1380220601 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
10 Hb_012132_050 0.1381644132 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
11 Hb_004607_060 0.139377015 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
12 Hb_006088_020 0.1399138258 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_068804_180 0.1409717483 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
14 Hb_000849_030 0.1424024703 - - PREDICTED: fimbrin-2 [Jatropha curcas]
15 Hb_000395_310 0.1428248638 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_001688_030 0.1432834013 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
17 Hb_009785_030 0.1434076053 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_001418_050 0.1435619772 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
19 Hb_103225_030 0.1438436274 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
20 Hb_001408_080 0.1439465137 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]

Gene co-expression network

sample Hb_000327_320 Hb_000327_320 Hb_012395_250 Hb_012395_250 Hb_000327_320--Hb_012395_250 Hb_000087_190 Hb_000087_190 Hb_000327_320--Hb_000087_190 Hb_001369_190 Hb_001369_190 Hb_000327_320--Hb_001369_190 Hb_007101_070 Hb_007101_070 Hb_000327_320--Hb_007101_070 Hb_002388_070 Hb_002388_070 Hb_000327_320--Hb_002388_070 Hb_010337_040 Hb_010337_040 Hb_000327_320--Hb_010337_040 Hb_000093_010 Hb_000093_010 Hb_012395_250--Hb_000093_010 Hb_028514_010 Hb_028514_010 Hb_012395_250--Hb_028514_010 Hb_000645_080 Hb_000645_080 Hb_012395_250--Hb_000645_080 Hb_003607_080 Hb_003607_080 Hb_012395_250--Hb_003607_080 Hb_001216_060 Hb_001216_060 Hb_012395_250--Hb_001216_060 Hb_003582_030 Hb_003582_030 Hb_000087_190--Hb_003582_030 Hb_000098_230 Hb_000098_230 Hb_000087_190--Hb_000098_230 Hb_001541_170 Hb_001541_170 Hb_000087_190--Hb_001541_170 Hb_000030_230 Hb_000030_230 Hb_000087_190--Hb_000030_230 Hb_000197_260 Hb_000197_260 Hb_000087_190--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_000087_190--Hb_000137_050 Hb_004558_060 Hb_004558_060 Hb_001369_190--Hb_004558_060 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_001369_190--Hb_002918_270 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_003399_110 Hb_003399_110 Hb_007101_070--Hb_003399_110 Hb_152914_010 Hb_152914_010 Hb_007101_070--Hb_152914_010 Hb_002890_330 Hb_002890_330 Hb_007101_070--Hb_002890_330 Hb_103225_030 Hb_103225_030 Hb_007101_070--Hb_103225_030 Hb_002186_110 Hb_002186_110 Hb_007101_070--Hb_002186_110 Hb_007101_070--Hb_000137_050 Hb_000395_310 Hb_000395_310 Hb_002388_070--Hb_000395_310 Hb_002874_200 Hb_002874_200 Hb_002388_070--Hb_002874_200 Hb_002997_150 Hb_002997_150 Hb_002388_070--Hb_002997_150 Hb_004032_290 Hb_004032_290 Hb_002388_070--Hb_004032_290 Hb_004020_030 Hb_004020_030 Hb_002388_070--Hb_004020_030 Hb_000230_410 Hb_000230_410 Hb_002388_070--Hb_000230_410 Hb_000453_020 Hb_000453_020 Hb_010337_040--Hb_000453_020 Hb_000482_120 Hb_000482_120 Hb_010337_040--Hb_000482_120 Hb_000574_170 Hb_000574_170 Hb_010337_040--Hb_000574_170 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017583 0.329339 0.413219 1.77276 0.0258341 0.0892378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0157104 0 0.0561969 0.432948

CAGE analysis