Hb_001123_250

Information

Type -
Description -
Location Contig1123: 216770-218236
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13220g
description POPTRDRAFT_548079; hypothetical protein
nr
ID XP_002297867.2
description hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
swissprot
ID Q94AY3
description E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1
trembl
ID B9GMR4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13220g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_250 0.0 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
2 Hb_003159_150 0.14448225 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
3 Hb_009476_160 0.1732507938 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
4 Hb_000479_060 0.1869630788 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
5 Hb_001999_200 0.1927278801 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
6 Hb_000003_700 0.1945070653 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_000365_280 0.1979517229 - - calcium binding protein/cast, putative [Ricinus communis]
8 Hb_003952_130 0.2090438056 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
9 Hb_000638_180 0.2099501328 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
10 Hb_000109_190 0.2106917936 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
11 Hb_002893_030 0.2110389102 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
12 Hb_000371_120 0.212380452 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
13 Hb_001817_120 0.2131508731 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
14 Hb_002066_010 0.2142341174 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
15 Hb_006911_020 0.2148535352 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
16 Hb_002973_030 0.2187133819 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
17 Hb_000062_640 0.218979485 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
18 Hb_000103_190 0.2217057559 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
19 Hb_000836_210 0.2227642219 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
20 Hb_000753_120 0.223034113 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]

Gene co-expression network

sample Hb_001123_250 Hb_001123_250 Hb_003159_150 Hb_003159_150 Hb_001123_250--Hb_003159_150 Hb_009476_160 Hb_009476_160 Hb_001123_250--Hb_009476_160 Hb_000479_060 Hb_000479_060 Hb_001123_250--Hb_000479_060 Hb_001999_200 Hb_001999_200 Hb_001123_250--Hb_001999_200 Hb_000003_700 Hb_000003_700 Hb_001123_250--Hb_000003_700 Hb_000365_280 Hb_000365_280 Hb_001123_250--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_003159_150--Hb_002893_030 Hb_003159_150--Hb_000365_280 Hb_004007_070 Hb_004007_070 Hb_003159_150--Hb_004007_070 Hb_000371_120 Hb_000371_120 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090 Hb_004282_040 Hb_004282_040 Hb_009476_160--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_000692_230 Hb_000692_230 Hb_009476_160--Hb_000692_230 Hb_004586_230 Hb_004586_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_001016_040 Hb_001016_040 Hb_009476_160--Hb_001016_040 Hb_000479_060--Hb_000365_280 Hb_000109_190 Hb_000109_190 Hb_000479_060--Hb_000109_190 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_002598_040 Hb_002598_040 Hb_001999_200--Hb_002598_040 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_000403_100 Hb_000403_100 Hb_001999_200--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_001999_200--Hb_017700_030 Hb_001675_310 Hb_001675_310 Hb_001999_200--Hb_001675_310 Hb_002066_010 Hb_002066_010 Hb_000003_700--Hb_002066_010 Hb_001699_030 Hb_001699_030 Hb_000003_700--Hb_001699_030 Hb_020301_010 Hb_020301_010 Hb_000003_700--Hb_020301_010 Hb_000172_070 Hb_000172_070 Hb_000003_700--Hb_000172_070 Hb_005588_130 Hb_005588_130 Hb_000003_700--Hb_005588_130 Hb_000003_700--Hb_002973_030 Hb_000365_280--Hb_004007_070 Hb_000365_280--Hb_002893_030 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000365_280--Hb_000109_190 Hb_002026_050 Hb_002026_050 Hb_000365_280--Hb_002026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278049 0.437936 0.171325 0.683921 0.0208417 0.0245989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.147418 0.0322199 0.245763

CAGE analysis