Hb_117807_030

Information

Type -
Description -
Location Contig117807: 42225-44102
Sequence    

Annotation

kegg
ID bvg:104897448
description uncharacterized LOC104897448
nr
ID KHG05592.1
description Protein MCM10 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117807_030 0.0 - - Protein MCM10 [Gossypium arboreum]
2 Hb_176472_010 0.1166398416 - - BnaC01g33060D [Brassica napus]
3 Hb_001235_090 0.2134846288 - - PREDICTED: uncharacterized protein LOC103449952 [Malus domestica]
4 Hb_034905_010 0.2465131144 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
5 Hb_000191_010 0.2745634119 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000545_160 0.2779870033 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
7 Hb_000120_690 0.3057334879 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
8 Hb_000398_050 0.319133041 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
9 Hb_006907_090 0.3292495827 - - -
10 Hb_001060_080 0.3327810406 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_036537_010 0.3657009999 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000256_060 0.3770023111 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
13 Hb_000733_150 0.3800234429 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
14 Hb_002793_080 0.3825963154 - - ribonuclease t2, putative [Ricinus communis]
15 Hb_011671_060 0.3852419663 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
16 Hb_026198_030 0.3900085031 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
17 Hb_015475_010 0.3973290086 - - hypothetical protein VITISV_034342 [Vitis vinifera]
18 Hb_000028_500 0.3978897992 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_051055_010 0.3981297198 - - -
20 Hb_001894_180 0.4028848681 - - galactinol synthase [Manihot esculenta]

Gene co-expression network

sample Hb_117807_030 Hb_117807_030 Hb_176472_010 Hb_176472_010 Hb_117807_030--Hb_176472_010 Hb_001235_090 Hb_001235_090 Hb_117807_030--Hb_001235_090 Hb_034905_010 Hb_034905_010 Hb_117807_030--Hb_034905_010 Hb_000191_010 Hb_000191_010 Hb_117807_030--Hb_000191_010 Hb_000545_160 Hb_000545_160 Hb_117807_030--Hb_000545_160 Hb_000120_690 Hb_000120_690 Hb_117807_030--Hb_000120_690 Hb_176472_010--Hb_001235_090 Hb_176472_010--Hb_034905_010 Hb_176472_010--Hb_000545_160 Hb_176472_010--Hb_000120_690 Hb_036537_010 Hb_036537_010 Hb_176472_010--Hb_036537_010 Hb_001235_090--Hb_000545_160 Hb_001235_090--Hb_000120_690 Hb_006907_090 Hb_006907_090 Hb_001235_090--Hb_006907_090 Hb_007975_040 Hb_007975_040 Hb_001235_090--Hb_007975_040 Hb_002793_080 Hb_002793_080 Hb_034905_010--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_034905_010--Hb_000733_150 Hb_000042_180 Hb_000042_180 Hb_034905_010--Hb_000042_180 Hb_168319_020 Hb_168319_020 Hb_034905_010--Hb_168319_020 Hb_000398_050 Hb_000398_050 Hb_000191_010--Hb_000398_050 Hb_000191_010--Hb_000545_160 Hb_026198_030 Hb_026198_030 Hb_000191_010--Hb_026198_030 Hb_000554_030 Hb_000554_030 Hb_000191_010--Hb_000554_030 Hb_000028_500 Hb_000028_500 Hb_000191_010--Hb_000028_500 Hb_000545_160--Hb_000120_690 Hb_000545_160--Hb_000398_050 Hb_004316_090 Hb_004316_090 Hb_000120_690--Hb_004316_090 Hb_000120_690--Hb_007975_040 Hb_004680_030 Hb_004680_030 Hb_000120_690--Hb_004680_030 Hb_012399_010 Hb_012399_010 Hb_000120_690--Hb_012399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0429483 0 0.0576681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.077278 0 0

CAGE analysis